Silene latifolia (white campion): 141652580
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Entry
141652580 CDS
T11116
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141652580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141652580
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141652580
Spliceosome [BR:
slaf03041
]
Complex A
U2 snRNP components
U2 related factors
141652580
Complex B
141652580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
141652580
NCBI-ProteinID:
XP_074316213
LinkDB
All DBs
Position
4:3136943..3140932
Genome browser
AA seq
1099 aa
AA seq
DB search
MGDSKDVKSKSSKEDSKRSRHEKERDRDGEKDRRRDREKAKDKDRDVESRRSERERSVDD
KRKEKDRDRETEKSRDKTKDRKREDREKEKEKEKEKAREKEREERERKREKERERERERE
REREKEKERERAREKEREREKERERERRERERERREREREKEREDREKEKERARRRREAE
TDDSDDERRNRDKKRRRRDDDHKEKDVEKSRSHRHREDSVDSLKKKGDSEPDKVQEKAGT
TEHDMEEEQRRLDDEMEKRRRRVEEWRELKKKKEEDVRKQLGVENAEQPKAGKNWTLEGE
SDDEEATPEEKNGTDMDVDGAPKLSTEDGDSMAVDSENGNAVPDGSAAVNGEEEEVDPLD
AFMNSMILPEVEKLNNAVAAPELTVVNGNHKKDDKSTGEVPKKKDSKKLLGRIMPDEDSD
QDYEDVEEDGKNTDDEDDDEFMKRVKKTKAEKLAVVDHSKIDYIDFRKNFYIEVKEISRM
TAEEVVAYRKELELKVHGKDVPKPIKTWHQTGLTTKVLDVIRKQNFEKPMAIQTQALPVI
MSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIALIMAPTRELVQQIYSDIR
KFTKVMNMTCVPVYGGSGVAQQIGELKKGAEIVVCTPGRMIDILCTSSGKITNLRRVTYL
VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLAKKVLNKPVEIQVGGR
SVVNKDITQMVEVRPENDRYLRLLEILGEWYEKGKILIFVHTQDKCDTLFRSLLKSGYPC
LSLHGAKDQGDRESTLADFKSNVCNLLVATSIAARGLDVKELEIVINYDVPNHYEDYVHR
VGRTGRAGRKGHAVTFISEDEARYAPDLMKALLLSEQPIPDDLKALADGFMAKVKQGLEQ
AHGTGYGGSGFKFDEQEDEARKAAKRAQAKEYGFEVDKSDSEDEDDEVRKRTDVTVPNPT
PAGQEAGPSVAGTSHVPEFILTKLQQNLAKLQQDAMGEHYEAELEINEFPQNARWKVTHK
ETLGPISDWTGASITTRGQFFPPGKIPAPGERKLYLFIEGRSEHSVKTAKAELKRVLEDI
TSQAISLPGGTQPGRYSIV
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgggggattctaaggatgtgaaatcaaagtcatcgaaggaggactctaaacggagtcgg
catgaaaaggaaagagatagggatggggaaaaggataggaggagagatcgggaaaaagcc
aaggataaggatagggatgtggagagtagacggtcggagagggaacggagtgtagacgac
aagcgtaaggaaaaggatagggatagggagacagagaaatctagagataaaactaaggat
cggaaaagggaagatagggaaaaggagaaggagaaggagaaggaaaaggcgagggaaaaa
gaacgtgaggagagggagaggaaaagagagaaggagagggaaagggaaagggaaagggaa
agggagagggagaaggaaaaggagagggaaagggcaagggaaaaagagcgggaacgagag
aaggagagagaaagagaaaggagggaaagagagagggagagaagggaacgtgaaagggaa
aaagaaagggaggatagagaaaaagaaaaggagagagcgaggaggaggcgagaagctgaa
actgatgacagtgatgatgaaaggaggaatcgagataagaaaaggcggaggcgagatgat
gatcacaaggagaaagatgtagaaaagagccggtcccacaggcatagagaggatagtgtg
gacagcctgaaaaagaagggtgatagtgagcctgataaagttcaggagaaggcagggaca
acggaacatgacatggaggaggagcaaaggagattagacgacgagatggagaagcgcagg
agaagagttgaggaatggagagagctgaaaaagaaaaaggaagaagatgtgaggaaacaa
cttggggtggaaaatgctgaacagcctaaggctggtaagaattggacactggaaggtgaa
tctgatgacgaggaagctacccctgaagaaaaaaatggcactgatatggatgtggatgga
gctcctaaactgtcgactgaagatggtgattccatggctgttgattctgagaatggaaat
gcagtacctgatggaagtgctgccgtcaatggtgaagaggaggaagtcgatcctttggat
gcttttatgaactcaatgatcttgcctgaagtcgagaagctgaataacgctgtggctgct
ccagaactcactgtagtgaatggcaaccataaaaaggatgataaaagcaccggtgaagtg
cctaagaaaaaggactcgaagaaacttcttggaagaattatgcctgatgaggattctgac
caagattatgaagatgtggaggaagatggaaagaacacagatgatgaagatgatgatgaa
ttcatgaaaagggtgaagaaaacaaaagccgagaaattagctgtggttgatcattcaaag
attgattatattgacttcaggaagaacttttacattgaggtgaaggaaatttcaaggatg
actgctgaggaggttgttgcttacaggaaggagcttgagttgaaggttcacggaaaagat
gtaccaaaaccaataaaaacatggcaccagacgggactaacaacaaaagtgctggatgtg
atcagaaaacagaacttcgagaagccaatggcaatccaaactcaggctttgccagtaatc
atgagtggtcgagactgcattggtattgcgaagactggctctggaaagaccttggctttc
gtgttgccaatgctgaggcacattaaggatcagccacctttgatgtctggggatggtccc
attgcgcttattatggcccctacgcgagagttggtccagcaaatttacagtgacattagg
aaatttaccaaagtaatgaacatgacttgtgttcctgtgtatggcggctctggtgttgcc
caacaaataggtgaactgaaaaagggggctgaaattgtggtatgcactcctggaagaatg
atagatattctttgtaccagcagcggaaaaatcacaaatcttcgacgagttacttatttg
gtcatggatgaagctgacagaatgtttgacatgggttttgagcctcagataacacgcatt
gtccagaatatacgaccagatcgtcaaactgtacttttctctgctaccttcccccgtcaa
gtggaagttttggcaaagaaagtacttaataaaccagtagagatccaggtcggtggcagg
agtgtggtcaataaggacataacccagatggtagaagtgagacctgaaaatgataggtac
ctaagactgttggaaatacttggggagtggtatgagaaggggaagattttgatctttgtc
cacacgcaagacaagtgtgacactttattccggagtctactcaagagcggttatccttgc
ctttccctacatggggcaaaggatcaaggggatcgcgaatccacccttgccgatttcaag
agtaatgtgtgcaatttgttggttgcaactagtatagctgctagaggtctagatgtgaaa
gaacttgagatagtaattaattatgatgtccctaatcactatgaggattatgttcatcgt
gttggccgaacaggtcgtgctggtcgtaagggccatgctgttacttttatatctgaagat
gaggctagatatgctcctgatctcatgaaagccttgctactttctgagcagcctattccc
gatgatttgaaagctctagcagatgggttcatggctaaggtgaaacagggactcgagcaa
gcccatggaaccggctatggtggaagtgggttcaagttcgatgagcaggaggatgaagct
agaaaagctgcgaagagagcacaggcaaaggagtacgggtttgaggtcgataagtccgat
tctgaggatgaagatgatgaggttcggaagaggacagatgtcacagtacctaaccctact
ccagcgggtcaagaagcgggtccttcggtggcaggaacaagtcatgtgcccgagttcatc
ttgacgaaattgcagcaaaacttggctaagctccaacaagatgccatgggtgagcactac
gaggctgaacttgagatcaacgagttccctcagaatgctcggtggaaggtgacacacaag
gagactttgggaccaatctctgattggacgggtgcctccatcacgacaaggggacaattt
ttcccgcctggaaagattccggccccaggagagcgaaaactctacctgtttattgaaggg
cggtcagagcattctgtaaaaacagccaaagctgaactgaaaagggtattggaggatatc
acatcacaagccatctctcttcctggcggtacacaaccaggcaggtattccattgtctga
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