Silene latifolia (white campion): 141652767
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Entry
141652767 CDS
T11116
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141652767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141652767
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141652767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Cytochrom_D1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
141652767
NCBI-ProteinID:
XP_074316467
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Position
4:complement(7372736..7380822)
Genome browser
AA seq
439 aa
AA seq
DB search
MMGMEGNFEQILHEGRLFRDVNSFIVAHLRDNNLTQAAIAVASATMTPMDVEVPPNRLLD
LVAKGIAVEKGEPIKGVSASIMFDSGSAVPASYGSIPVPRTSAIDFSVQTDVKGPSKSFP
DHESRHISEHKNVARCARFSPDGRYVATGSADTSIKLFEVAKIKQMMLPETKDGPVRPVI
RTFYDHMQPVNDLDFHPQNPIVISGAKDHTIKFFDFSKATAKRAFRVIQDTHNVRSVSFH
PSGDYLLAGTDHPIPHLYDINTFKCYLSANTDDIAANAAINQIRYSSTGGMYVTASKDGA
IRLWDGVSAKCVRPIVGAHGAEATSGMFTKDHRFVLSCGKDSTVKLWEVGTGRLVKQYVG
ATHTHLRCQAVFSDTEEFILSIDEPRNEIVVWDALTALEVTRLRSNHTGPPRWIEHSPIE
ATFLSCGTDRSIRFWKEAI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtatggagggaaatttcgagcaaatacttcatgaaggcagactttttcgtgat
gttaattcatttatagttgcccatcttcgtgataataacctcactcaggccgcaattgct
gtagcttcggctaccatgaccccaatggacgtcgaagttcctccaaatcgacttcttgat
cttgtcgctaagggtattgcagtggagaaaggtgaacccataaaaggggtatctgcatct
ataatgtttgattccggttctgctgtgccagcatcttatggttcaatcccagttcctcgg
acttccgccattgatttcagtgtccagacagatgtaaaaggtccatcaaagagcttcccg
gaccatgaatcacggcatatatcagagcacaagaatgttgcacgatgtgcaaggttcagt
cctgatggaagatatgttgcaacaggaagtgcagacacatccattaagctctttgaggtt
gcaaaaataaagcaaatgatgcttccagagacaaaggatggtcctgttcgtcccgtcata
cggacattctatgatcatatgcagccagtaaatgatctcgattttcatccacaaaatcct
atcgtaatttccggagctaaagatcatacaataaagttttttgatttctcaaaagcaaca
gccaaaagagctttcagagttattcaggatacccacaacgtacgttctgtatcatttcac
ccatctggtgattatcttttggcagggaccgaccacccaattcctcatttgtacgatatc
aacactttcaaatgttatttgtcagctaatactgatgatattgctgccaatgcggccata
aatcaaatcaggtattcctctactggtggtatgtatgtcacagcgtccaaagatggggct
attagattatgggatggggtcagtgccaagtgtgtacgtcccatagttggcgcccatgga
gctgaggcaactagtggaatgttcacaaaggatcacaggtttgttctgtcctgtggcaag
gattccacagtgaaattatgggaggttggcactggaagactggtgaagcagtatgttgga
gccacgcacacacacttacggtgtcaggctgttttcagtgacaccgaagaattcatatta
tccatagatgaaccaagaaatgagattgttgtgtgggacgccttaactgcactggaggtt
acaagacttcgctcaaatcacactggaccacctcggtggatagaacactcgcctatcgag
gcaacattcctttcttgtgggactgaccgatctatccgattctggaaggaagctatctag
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