Silene latifolia (white campion): 141653204
Help
Entry
141653204 CDS
T11116
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141653204
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
141653204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
141653204
NCBI-ProteinID:
XP_074316991
LinkDB
All DBs
Position
4:20763131..20765268
Genome browser
AA seq
443 aa
AA seq
DB search
MESINNDVKLRLLSLIIFSCILVGEANIGHFDDHWLRRQEAAKKAANASYDPNPHNVTNH
LNRQVHKALNESDEASTRRGLFGSLYKGECLAANPIDRCWRCDPNWAQNRQKLADCVLGF
GHKVRGGQGGEIYVVTDNTDTDLVNPKPGTLRHAVIQKEPLWIIFKHGMVIRLSEELMIS
ANKTIDGRGGHVHIAGGAGLTVQFVDNVIIHNIHVHDINPGGGGMIRDSIEHYGFRTRSD
GDGISLYGATNVWIDHVSMSNCADGLIDAIEMSTAITISNCHFTDHNDVMLFGAKDERSE
DKIQQITLAFNHFGKRLIQRMPRCRWGFFHVVNNDYTHWEMYAIGGSQNPTIICQGNRFI
APPNPFAKEVTKRDFAPDYEWKTWLWVSENDVMINGAYFRGSGDKSKMASFTKQDMISAK
PGTYVRRLTRFSGALLCKEGSPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaattaataatgatgttaaattaaggttactttccttgatcattttttcatgc
atccttgttggagaagctaatataggccattttgatgatcattggctaaggcgacaggag
gcggctaagaaggcggccaacgcctcgtacgaccccaatccacataatgtcacaaaccac
cttaatcgtcaagtccacaaggcattgaatgaaagcgacgaagcaagtacaaggagaggc
ctatttgggagcctgtacaaaggcgaatgcttagccgccaacccaatcgacaggtgttgg
cgatgtgacccaaactgggcccagaaccgtcaaaagctagccgattgcgtactaggtttc
ggtcacaaggttcgaggaggacaaggtggtgaaatatacgtggtgacggacaataccgac
actgatttagtaaacccaaagccagggaccttacgtcacgctgtcatccaaaaagagccc
ttgtggatcatctttaagcatgggatggtaattaggcttagtgaagagcttatgatttcg
gctaataagacgattgacggacgtgggggccacgtacacattgccggtggggccgggttg
acggtacaatttgtggacaatgtgatcatacataatattcatgtacatgatattaaccca
ggtggtggaggaatgattagggactctattgagcactatgggtttcgaactcgtagcgac
ggtgacggaatttcattgtatggagctactaatgtttggattgatcatgtttctatgtct
aattgtgcggatggtttgattgatgctattgagatgtctactgctatcaccatctcaaat
tgtcatttcactgaccataatgatgtaatgttgtttggagcgaaagacgaaagatcagaa
gacaaaatccagcaaataacattggccttcaaccactttggtaagcgtttgatacaaagg
atgccaaggtgcagatggggattctttcatgtcgttaacaacgactacactcactgggaa
atgtacgccattggcggtagccaaaatccgactatcatttgtcaaggaaatcgattcatc
gctccccctaacccctttgctaaagaggtgacaaagagggattttgcgccggactatgaa
tggaagacttggttgtgggtatcagaaaatgatgtaatgataaacggagcatacttcaga
ggatcaggtgataagagcaagatggcctccttcactaaacaagatatgattagtgccaaa
cccggaacctatgtcaggcggctcactcgcttctccggtgccctgttatgtaaagaaggc
tcaccgtgttag
DBGET
integrated database retrieval system