Silene latifolia (white campion): 141653252
Help
Entry
141653252 CDS
T11116
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03030
DNA replication
slaf03420
Nucleotide excision repair
slaf03430
Mismatch repair
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141653252
03420 Nucleotide excision repair
141653252
03430 Mismatch repair
141653252
03440 Homologous recombination
141653252
03460 Fanconi anemia pathway
141653252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slaf03000
]
141653252
03032 DNA replication proteins [BR:
slaf03032
]
141653252
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141653252
Transcription factors [BR:
slaf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
141653252
DNA replication proteins [BR:
slaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
141653252
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
141653252
MMR (mismatch excision repair)
141653252
DSBR (double strand breaks repair)
HR (homologous recombination)
141653252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
TTc_toxin_rep
Motif
Other DBs
NCBI-GeneID:
141653252
NCBI-ProteinID:
XP_074317060
LinkDB
All DBs
Position
4:complement(23150275..23154017)
Genome browser
AA seq
616 aa
AA seq
DB search
MEVKTVTHDAISKIKANPSPDSSADVPDLVIQVLDLKAVGNRFMFTASDGKEKLKGILQS
SFSQMVSSGAIQNLGLIRVLDYTLNDIPNKSEKYLMVTNCESVSPALDAEIKTEVKNEDV
EMKTEVKKEDGGILLKPKQIPVAKSAAQIMHEQSQNMAPAARTSMTRRVHPLASLNPYQG
NWTIKVRVTNKGNLRSYKNARGEGNVFNVELTDEDGTQIQATMFNEAARKFYDTFQMGRA
YYISKGSLKVANKQYRTVPNDYEMTLNEYSLVEEAKDEGVFIPETKFDFVPIDQLGPYVN
GKELVDVIGVVQNVSPTTSIKRKINNDMITKRDITIADESNKTVVVSLWNDHATTLGQEL
LDMADKSPVVAIKGVRVSDFQGVSLSAVSKSIIKVDPDLPESKKLKSWYDSEGKDAPMAS
AGAGLSPSANAGGRSVYTDRVTISHITSNPSLGDEKPVFFNLRAYISLIKPDQAMWYRAC
KTCNKKVTEAIGSGYWCEGCQKNEEECNLRYIMNAKISDASGEAWVSTFNDQAERIIGCS
ADELDKLKSEEGEESPYQTKLKEATWMPYHFRVSVVQNEYMNEKRQRITLRAVIPVDVAA
ETKYLLEEISKAKASQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaagacagtaacccacgacgccatttcaaagatcaaagctaacccatctcct
gattcctccgccgacgtccctgatttggtcattcaagttcttgatttgaaggctgttggc
aatcgcttcatgtttactgcaagtgacgggaaagaaaagctcaagggaatcctacaatcg
agtttttcgcagatggtgtcgtccggtgcaattcagaacttgggtctgattcgggttctt
gactatacgctcaacgatatcccgaacaagtccgaaaagtatttgatggtaacaaactgt
gagtctgtatctcctgcgcttgatgcggagattaagaccgaggtgaagaatgaggacgtg
gagatgaagacggaggttaagaaagaagatggtggtattcttttgaagcctaaacagatc
ccggttgcgaaatctgctgctcagattatgcatgagcaaagccaaaatatggctcctgct
gcacgaacttcgatgacaagaagagttcaccctctagcttctttgaacccttaccaaggt
aactggaccattaaggtcagagttaccaacaaggggaacctgcgtagctacaaaaacgca
agaggcgaaggaaatgtcttcaatgttgagctgactgatgaagatggtactcaaatacaa
gcaacaatgttcaatgaagctgcgagaaagttctatgacactttccaaatggggagggca
tattacatatcaaagggaagtctgaaagtggctaacaagcagtacaggaccgtgcctaat
gattatgaaatgaccctgaatgagtattctcttgtcgaggaagccaaagatgaaggtgta
ttcattccggaaacaaagtttgactttgtcccgattgatcagttgggtccatatgtaaat
ggaaaggagcttgtggatgttattggagttgttcaaaatgtgtccccaaccacgagtatt
aagagaaagattaacaatgatatgataacaaagcgtgatataaccattgctgatgaatcg
aataaaacagttgtagtttctctgtggaatgaccatgccacaacattaggacaggaattg
ctggacatggctgataagtcccctgttgtagccattaagggtgttagagttagcgacttc
caaggtgtttccttatcggcagtgagcaaaagtataataaaagtcgaccctgatctacct
gaatcaaaaaagttgaagtcttggtacgattctgaaggtaaagatgctccgatggcttct
gctggtgctgggttgagcccttctgctaatgcaggtgggaggtctgtgtacacagaccga
gtcaccatttctcatatcacaagcaacccatctttaggcgatgaaaagcctgtgttcttc
aacctgagggcatatataagcctgattaagcccgaccaagcaatgtggtatcgagcttgt
aagacatgcaataagaaggtaacagaagcaataggatctggatactggtgtgaaggatgt
cagaagaatgaggaggaatgcaacttaagatacatcatgaatgctaaaatctcggatgca
agtggtgaagcttgggtttcgacattcaacgatcaggctgagagaattattggttgctct
gctgatgagcttgacaagttgaaatcagaggagggagaggaaagtccctaccaaacaaag
ctgaaagaagcaacatggatgccttaccatttccgtgtaagcgtagtgcagaacgagtac
atgaacgaaaagcgacaaaggatcacattaagagcagtcattccagttgatgttgcagct
gaaaccaaatatcttctggaggagatttctaaagctaaagcttcccagtag
DBGET
integrated database retrieval system
