Silene latifolia (white campion): 141653381
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Entry
141653381 CDS
T11116
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141653381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141653381
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141653381
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
141653381
NCBI-ProteinID:
XP_074317218
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All DBs
Position
4:31295645..31303475
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AA seq
943 aa
AA seq
DB search
MDDDLHFPDHNKLPELKLDAKQAQGFLSFFKTLPKESRAVRFFDRRDYFTAHGENATFIA
RTYYHTTTALRQLGSGSEGLSSVTISKSMFETIARDLLLERTDHTIELYEGSGSNWRLVK
SGSPGNLGSFEDILFANNEMQDSPATVALVLNFKDIGCTVGLSYVDLTRRVVGLAEFLDD
SHFTNTESSLVSLGCKECLLPADLAKSTESRSLLDALSRCGVMVTERKRSEFKARDLVQD
LSRLVKGSIEPVRDLVSGFEYASAALGSLLSFADLLSDESNYGNYTVQPYSLHSFMRLDS
AAMRALNVMESKTDANKNFSLFGLMNRTCTVGMGKRLLHMWLKQPLLDVNEINARLDLVQ
AFIEDIELRQDLRQHLKRISDMERLARTIQRKRASLHQVVKLYQSSIRLPYIRSALERYD
GQFSALVRERFLEPFEIWSDDDHLNKFISLVETSVDLDQLVNGEYMISSSYDSRLLQLKD
EQESVEREIESLHIKTATDLDLAADKVLKLEKGTQFGHVFRITKKEEPKVRKKLTTQFIV
LETRKDGVKFTNPKLKKLGDQYQRILEEYKNCQKELVLRVVQTAATFSEVFESLAVLLSE
LDVLLGFADLASSCPTPYTRPDITPSDAGDIILEGSRHPCVEAQDWVNFIPNDCKLVREK
SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASVSVRDCIFARVGAGDCQLRG
VSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAISEHIVDVIKAPTLFA
THFHELTALGHDNSDMQPQSRKIAGIANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIH
VAEFANFPESVVSLAREKAAELEDFSPAIINTDDPTKEVGVKRKRPDPDAISEGAARAHR
YLKEFAELPLDRMELKEALLRVSEMKSDLERDAKTHPWLKQFL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgatttgcatttcccagatcataataagctccctgaactcaagctcgatgct
aaacaggcgcagggttttttgtcattttttaaaaccctacccaaggagtctcgagctgtt
cggttcttcgatcgtcgggattattttactgcccatggagaaaatgcaacttttattgcg
agaacgtattaccacactaccacagccttgcggcagttgggaagtggttctgaaggcctg
tcaagtgtaactattagtaaaagcatgtttgaaacgattgctcgcgatttgcttttggaa
aggacagaccacactattgagctgtatgagggcagcggttctaactggagacttgtgaag
agcggaagtccgggaaaccttggcagttttgaagacattttgttcgctaataatgaaatg
caggactctccagccactgttgccttggttctaaacttcaaggacattggatgcactgtt
gggctaagttatgttgaccttaccagaagagttgttggtttggctgagtttttagatgac
agccacttcactaatacggaatcttcattggtttcgcttggttgcaaggaatgtttactc
ccggctgacttggcaaagtccactgaaagtagaagcttgctagatgcattgtcaagatgt
ggtgtaatggtaactgaaagaaaaaggtccgagtttaaggcaagagatttggtgcaagat
ctcagcaggcttgtcaaaggctcgattgaacctgttcgtgatttagtttccgggtttgaa
tatgcatcggctgctttaggctccttattatcgtttgcggatttactttcagatgaaagt
aattatggaaattatactgttcagccttatagtcttcacagtttcatgagattagattct
gcagctatgagagctctaaatgtcatggagagtaaaactgatgcaaacaaaaattttagt
ctatttggtctcatgaatagaacatgtactgttgggatgggaaaacggctacttcacatg
tggttgaagcagcctttgctagacgtgaatgaaataaatgctcgactggatttagtacaa
gcctttatcgaggatatagaacttcgccaagatctaaggcaacatttaaaacgaatatca
gatatggagcgactagctcgtactattcagaggaaacgggccagtctacatcaggttgta
aaactctatcagtcaagcatcagacttccttacattagaagtgctctcgaaagatatgat
ggacagttttctgcattggttagagaaaggtttttggaaccttttgaaatttggagcgat
gatgatcatttgaacaagttcatttcccttgtggaaacttctgtcgaccttgaccaactg
gtgaatggtgagtatatgatttcatctagttacgattcaaggcttcttcaactgaaagac
gagcaagagtcagttgaacgcgagatagaaagccttcacatcaaaactgctactgatctt
gatcttgctgctgataaagtcttaaagttggaaaagggaacacaattcggacatgttttc
aggatcacgaagaaagaggagccaaaagtaagaaaaaagcttactacacaatttattgtc
cttgaaacaagaaaagatggtgtgaagttcacaaatccaaagctaaaaaaattaggggat
caataccaaaggatactggaggagtacaaaaactgccaaaaagaattggtgctgcgagtg
gttcagactgctgccactttctctgaggtgtttgagtctttagctgtgttactgtctgaa
ctggatgtgttactcggttttgctgatttggcttcaagctgtccaactccctatacaaga
ccagacatcactccttctgatgctggggacatcatcttagaagggagtagacacccttgt
gtggaggctcaagactgggtgaatttcataccaaatgattgtaaacttgtcagagaaaaa
agttggttccaaatcatcactggacccaacatgggaggaaaatccactttcatcagacaa
gttggtgtgaatattttgatggcgcaagttggttcatttgttccttgtgacagggccagc
gtttctgttcgtgattgcatttttgctcgtgttggtgctggtgactgccaattgcgagga
gtgtctacattcatgcaagaaatgctagagactgcatcaatattaaagggggccactgac
aagtctctgataataattgatgagcttggccgaggaacatcaacttacgatggatttggt
ttagcttgggcaattagtgagcacattgttgacgtcattaaagcccctactctgtttgcg
actcactttcatgaactaacagctttaggtcatgataatagtgatatgcaacctcagagt
agaaagattgctggcattgcaaattatcatgttagtgcacacattgattcttcaagccgc
aaactgactatgctatacaaggttgaaccaggagcgtgtgatcaaagttttggtatccat
gttgcagaatttgctaattttcctgaaagcgtggtgtcacttgctagagaaaaggcagct
gaactggaagatttttctcctgccataatcaatactgatgatcccactaaagaggtcgga
gtgaaaaggaagagacctgaccccgacgcaatttccgagggtgctgcaagggctcaccga
tacttgaaagagtttgcagagcttccattagatcggatggagttgaaggaagcattgctg
cgtgtcagtgaaatgaagagcgacttggagagggatgctaagacacatccttggttgaag
cagtttctctag
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