Silene latifolia (white campion): 141653481
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Entry
141653481 CDS
T11116
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141653481
03460 Fanconi anemia pathway
141653481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141653481
03036 Chromosome and associated proteins [BR:
slaf03036
]
141653481
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141653481
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
141653481
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
141653481
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
141653481
FA (Fanconi anemia) pathway
Downstream FA components
141653481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
141653481
NCBI-ProteinID:
XP_074317360
LinkDB
All DBs
Position
4:complement(47340590..47356276)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSTWQLFSDDDNNFRWKISPETTHSSQHFHLPSSPPAPLPSCHDVLLLGCSKIFEDNEES
SKSDDNNHFGNADAGGRLPMFSTGLGNSVVLDKASIAKAASILGDDFKDNVNAGHEFTSP
NSVFQMGSGKKVGGQGFVSPNSMFQTGSGKKVNISSAGLSRAKALLGMNENDGDEPPKKI
LRGSDGLRYEMPPNLGKAHMVINHGGTENGTLLKKARLHSKNEIVDQNISNLIQPGMCNP
SVKSSGFKFQTAGGRSISVSGDALQRAKNLLGDPEIGSLLDEEDAGASMFSFCKNGNSDG
GLFNKENNIGHLTLHQLEKSEQNPKIFVSPMKQSSDRKQTKAKSEALVSGTNLISKFNAE
ASLCISSGKQPCPKEPFMENHFGSEVTSQHTMANGVGSGLHRSLKQSGRPLADITNTTDT
NSTSVKGTPSEVRRLGRRTSLTPFKMPRSSKFVTPLNNNLHVIPNGYSSRMSETSFPRRK
VSMRYPPQSSRTYITEFFKEPPAYPQKLEIISSELRQINPECSEEYTFLDGSHTIDAGTF
YDMLLQSGASAQHITKKWVANHYKWIVWKLACYERLYSAKFAKKFLTSSNVLEELKYRYE
REVNHGQRSAIKRILEGDASPSSMLVLCISAIRSASEGTSSTKLTGETSMARLELTDGWY
SIDALLDPLLSKHLAVGKLFVGQKLRICGAGLNAWEGPVSPLEASATVSLVLHINGTYRA
SWDARLGLCRGAYAPLAFRCIKGNGGSVPRTLVGVTRIYPVLYRERLKNGGYIVRSEKME
TAVSQLYSQRRSNIIEGLTLDFQRGSNNSFVADDYDNEEGAKILKMLEHAAEPELMMAEM
SSEQLTSFSIYRAKAEENRQCDLQKLIEKAIEDAGLSGREVSPFMRVRVVGLQCKYHAKI
KDFREGLITIWNPSERQKLELEEGQTYAISGLLPLHSDSNTLYLQARGSSTKWQPLKTIE
NKSFMPFFNPRKALSLSRMGEVPLSSEFDTAVFVVHVGLEHVDGPQKKQWVFVTDGSLSE
LRTDDSTMPLLAISFCSPCTDDDSTSPINYNLVGSIVCFCNLVKRAKDHANHMWVAEATE
NSTYYLNYEHPSCSHVKDAFGLVKKWEQNSSLTIEKLKKRVLYIIGDNAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttattctccgacgacgacaataattttcggtggaaaatatcgccg
gagacgacacattcgtcgcaacatttccaccttccgtcttctcctcctgctccattgcct
tcatgtcacgatgtcctccttttaggatgttcgaagatttttgaggataatgaggaaagt
agtaagagcgatgacaataatcactttggtaatgctgatgctggtggtcgtcttcccatg
tttagtactggattggggaattcagttgtgcttgataaagcttccattgccaaagctgct
tcgattcttggtgacgattttaaggataatgtcaatgcaggacatgagttcacttcccct
aattcagttttccaaatgggatctgggaaaaaagtcggaggtcaaggcttcgtatctcct
aattccatgtttcaaacaggctctggaaaaaaggttaacatttcttctgcggggctttct
agagccaaggcgttgttgggtatgaatgaaaatgatggtgatgaacctccaaaaaagata
ctacgtggtagtgatggattgagatatgaaatgccaccgaatttagggaaggcacatatg
gttatcaatcacggtggaactgagaatggtacactattaaaaaaggctcgtcttcactca
aagaatgagattgttgatcagaatattagtaatcttatacaacctggaatgtgcaaccct
tctgtaaaatcttctggattcaagttccaaactgctggcggtaggtctatttctgtgtct
ggtgatgcattgcagcgcgcaaaaaacctccttggtgatccagagattggtagtttattg
gatgaagaagatgcaggtgcttccatgttttcattttgcaagaatggtaattcagatggg
ggcctctttaacaaagagaacaatattggtcatttaactcttcatcaacttgaaaaaagc
gagcaaaatcctaagatctttgtatcgccaatgaaacagtcttctgacaggaagcaaacc
aaagccaaatcagaggcattggtttcagggaccaatttaatatcaaaatttaatgctgag
gcaagcctctgcatttctagtggtaaacaaccatgtccaaaagaaccttttatggaaaat
catttcggcagtgaagtaacaagccagcataccatggcaaatggtgtgggctccggtctt
cataggtctctaaagcaatcaggaagaccacttgctgatatcacaaacaccactgacact
aattctacaagcgtcaaaggaacaccatctgaggttaggagacttggaagaagaacttcc
cttactcctttcaagatgccacgaagctcaaagtttgttactcctctaaacaataacctc
cacgttatcccaaatgggtactcgagcagaatgtctgaaacttcatttcctcgaaggaag
gtttctatgcgttacccacctcagtcttcaagaacttacatcaccgagttttttaaagaa
cctccagcatacccacaaaaactagaaattatttcttcggagctacgacagattaatcca
gaatgttcagaggaatacacatttttggatggatcccacacaattgatgctggcactttc
tatgatatgctgctccaatctggagcatcagctcaacatatcacaaaaaagtgggtagca
aatcactacaagtggattgtgtggaaactagcatgttatgaaagattatattcagctaag
tttgcgaagaaatttctcactagttctaatgtgcttgaggaattaaagtacagatatgaa
cgggaagttaatcatggtcaacgttctgcaattaagagaattttagaaggagatgcgtca
ccttcttccatgctagtgttatgcatttcagctatccgatcagctagtgagggaacttca
agtacaaaattgactggagagacaagcatggcaagattggaacttacagatggatggtat
tctatagatgccctgttggatccactgctgtccaaacacctagctgttggaaagctattt
gttgggcaaaaactgcggatatgtggggctggattaaatgcctgggaaggacctgtttct
cctcttgaggcgtctgcaaccgttagtttggtgcttcatataaatggaacttacagagct
agctgggatgcacgtttaggattgtgtagaggtgcctatgcaccactggcatttagatgc
atcaagggcaatggaggctcagtacctaggaccttagttggagttaccaggatatatcct
gtcctttacagagaaaggttgaagaatggaggatatattgtgaggtcagagaaaatggaa
accgcagtctcacagctttatagccagaggcgttctaacatcatagaaggtcttacatta
gactttcagagaggttccaataatagttttgtggccgatgattatgacaacgaagaaggg
gcaaagatcttgaagatgcttgagcatgctgctgagccagaacttatgatggcagaaatg
agttctgagcagctaacatcgttttccatttaccgtgcaaaagctgaggaaaacaggcag
tgcgacttgcaaaagttgatcgaaaaagccattgaagatgcaggactaagtggcagagaa
gtctccccatttatgcgtgtaagggtcgttggactacaatgtaaataccatgctaaaatt
aaagacttcagggaaggattaataacaatctggaacccttctgaaaggcagaaacttgag
cttgaagaggggcaaacttatgctatttcaggcctcttaccgttgcattctgattcaaac
acactttatctacaagccagaggatctagtactaaatggcagcctttaaaaacgatagag
aacaaatcttttatgcccttcttcaatcctcgcaaggctctttcattatcaagaatggga
gaagttccactgtcaagtgaatttgatacagctgtgtttgtcgtgcacgtgggcctggaa
catgttgatggtccgcaaaagaaacagtgggtgtttgttactgatggatccttgagtgag
ttaagaactgatgattcaacaatgccattgctggccattagcttttgctctccgtgcact
gatgacgattcaacatctccaatcaactataatcttgttggatctatcgtctgcttttgt
aatcttgtgaagagagctaaagatcacgcgaatcatatgtgggttgcggaagctactgaa
aattcgacatattaccttaattatgagcatccttcttgttcccatgttaaagatgccttt
ggcttagtcaagaaatgggagcagaattccagtttgacaattgagaagctaaagaagagg
gtcctgtatataattggtgataatgctccctga
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