Silene latifolia (white campion): 141653709
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Entry
141653709 CDS
T11116
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141653709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141653709
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141653709
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
141653709
NCBI-ProteinID:
XP_074317650
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All DBs
Position
4:105359913..105369645
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AA seq
1283 aa
AA seq
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MAPSRKLVNGRSPLVNKQHQITSFFTKSSSPKPSESPINPGESSIPELRNPNPNFVAGHN
ISSPTTPSPLNGNLRPKPVLIIGSKEEYGEQVVSRRIRVFWPLDKEWYEGCVKAYDKSVG
KHLVEYDDADEELIDLKKVKFEWVGDTGNHTRKLRRLRKTSIVVEDDSESEEKGNVDGEV
LEDEDSGVNVGSEETEDCLGEMELVEEKAVGQLKRKRGDRGGDGGAGKARKEDGGENVDL
SIKKKKKKSGFLVTEFGTKVENVAASVQEAKPANVVDSMDTDALERFGIREEKKLPFLGK
DRRDAKRRLPSDPHYDPKTVYLPPQFLKSLTGGQRQWWEFKSKHMDKVMFFKMGKFYELF
EMDAHVGVKELDLQYMKGEQPHCGFPEKNFSVNVEKLARKGYRVLVVEQTETPDQLEIRN
KKEGSKDKVVKREICAIVSKGTLTEGELSINVDASYIISVTEKCPVSSDNKQELVYGVCV
VDVTTSRVIVGQMKDDVECNALCCLLSELRPVEIIKPANMLSLETERAITRYTRNPLVNE
LVPGLEFWGADKTVGELKSFYSCISSLSVSSDKTSEAAPNFGREDDSCELPDVIKDLLTA
GDDGSLALSAFGGCLYYLRQAFLDQALLRYAKFERLPCFGFRDVLKKPYMVLDAAAMENL
ELFENSRNGDSAGTLFSQLNHCATAFGRRLLKTWLARPLYHVQSIKERQDAVDGLRGNNL
YLTLEFRDKLSKLPDMEKLLSRLFSSSEANGRNANKIILYEDAAKRQLQEFISALRGCEI
MTLACSSLGSILDYTDSELLHRLLVPGKERPDVSSTLQQFREAFDWVEANSSGRIIPHEG
VDAEFDTASKMIEEIKSNLEKHIIEQRKVIGDESIKYVIVGKDRYLLEMSESLSRSVPRD
YELRSSKKGFSRYWSPYIKKMVGELAQAEAVKESHLKGILQDLIERFCEHHTMWRRLVAV
VAELDALVSLVIASDYFEGPKCRPSVSNASNSNDVPHLIAKSLGHPLLKSDSLSRGAFVP
NDINIGGPDHATFILLTGPNMGGKSTLIRQICLAVILAQVGADVPAEDFKLSLVDRIFVR
MGAKDQIMAGHSTFLTELSETASMLTSATHDSLVALDELGRGTSTSDGQAIAESVLEHFV
REVQCRGLFSTHYHRLAINYKRDPKVSLCHMACQVGQGNGGLEEVTFLYRMTLGACPKSY
GVNVARIAGIPDCVLRKAAAKSREFEMAFGRHSKRPDNNVQNRENEAASFIQNLIRITSH
ADLQTIASFSQLQRNARILLEQC
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttcccgcaaactcgtcaatggccgatctccattagtcaacaaacagcatcaa
atcacctctttcttcactaaatcatcgtctcctaaaccttctgaatccccaattaatcca
ggtgaatcatcaattcccgaattgcgaaaccctaaccctaatttcgttgctggccataat
atatcctcgccgacaactccgtctcctcttaatggtaatttgagacccaaacccgtgttg
attatcgggtcaaaagaggaatatggtgaacaagttgtgagtaggaggattagggttttc
tggccgttggataaggagtggtacgaagggtgtgtgaaggcgtacgataagagtgtaggc
aagcatttagtggagtatgatgatgccgatgaggagttgattgatcttaaaaaagtgaaa
tttgagtgggttggggatactgggaatcatacgaggaagttgaggaggttaaggaagacg
tccatcgttgtagaagacgacagtgaaagcgaggagaaggggaatgtggatggtgaagtg
ctggaggatgaggattcaggtgtaaatgtgggaagcgaggagacggaagattgtttggga
gagatggaattggtagaagagaaggcggtggggcagttgaagaggaaacgaggagacagg
ggtggagatggaggagcagggaaagctcgtaaggaagatggtggagagaatgtggatttg
agtattaagaagaagaagaagaaaagcgggtttttggttactgaatttggtaccaaggtg
gagaatgtggctgctagtgttcaagaggcaaaacctgcaaatgttgttgacagcatggac
acagatgccctggagagatttggtattcgtgaggagaaaaagctgccgttcctgggcaaa
gatcgtcgggatgccaagaggagactcccaagtgatccacattatgatccgaaaaccgtt
tatttgcctcctcaattcctgaaaagtctcactggcggtcagagacaatggtgggagttt
aagtcaaagcatatggacaaagtcatgttctttaagatgggcaaattttacgagcttttc
gaaatggatgcccatgttggtgtgaaagaactcgatcttcagtatatgaagggagaacag
cctcattgcgggttcccagaaaagaatttttcggttaatgtggagaaactagcaagaaag
ggttatcgagtgttagtagtggagcagacggaaactcctgatcagcttgagattcgtaac
aagaaagaaggttcaaaagacaaggtggtcaaacgagaaatatgtgccattgtgtctaaa
gggacactcactgaaggagagctgtctataaatgtcgatgcgtcatacataatctcagta
acagaaaagtgccccgtctcttcagataataagcaagagcttgtgtatggtgtttgtgtt
gttgatgtcactacaagccgagtaattgtcggccagatgaaggatgatgtggaatgcaat
gctttgtgctgccttctctcagaattaaggccagttgaaattataaaacctgctaatatg
cttagcctcgagactgaaagggcaatcaccagatacacaagaaatcctctcgttaacgag
ttagttcctggtctcgaattttggggagctgacaaaacagttggcgagttgaaaagcttc
tacagttgcatcagtagtctctctgtttcttctgataagacttcagaggcagcccccaac
tttggtagggaagatgattcatgtgagcttccagatgtcatcaaggaccttttaacggct
ggtgatgatggttcccttgcactgtcagcttttggaggctgtctttactatttgagacag
gctttccttgatcaagctttgcttcgatatgctaaatttgagcgacttccatgttttgga
ttccgggatgttcttaaaaaaccgtatatggtattagatgcggctgcaatggagaacctg
gaattatttgagaacagtagaaatggagactcagcagggactttgttttcccagctcaat
cactgtgcaactgcatttgggaggaggttactaaaaacatggcttgcaagacccttgtat
catgttcagtcaatcaaagaacggcaagatgctgtagatgggcttcgaggcaataattta
taccttactcttgaatttcgagacaagttgtccaagttgcctgacatggagaaattgctt
tcccgcctcttttctagcagtgaagctaatggaagaaatgcaaataagatcattctttat
gaagatgctgcgaaaagacagcttcaagaattcatttcagcattacgtggttgtgaaata
atgaccctagcttgctcttctctgggttctatcttagattatactgattctgaattgtta
caccgtctgttagttcctggcaaagaacgtcctgatgttagttctactttacagcaattt
agagaagcctttgattgggtagaagctaacagttcaggtcgtatcatacctcacgaggga
gttgatgcagaatttgatactgcctctaaaatgattgaggagatcaaatctaatctagag
aagcatataattgaacaacgaaaagtaatcggtgatgaatcgatcaagtatgtgattgtt
ggaaaagatagataccttttagaaatgtctgaaagcttgtccagaagtgttcctcgggac
tacgagctgcgatcatccaagaaggggttttccaggtattggtctccatatattaagaag
atggtaggagagctggcgcaagctgaagctgtgaaggaatctcacttaaaaggaattttg
caagatttaattgaacgtttttgtgagcatcatacaatgtggagaaggttggttgcagtt
gtcgcagaattagatgctctcgtcagcttggtgattgcaagtgattactttgaaggaccc
aaatgccgcccaagtgtttcaaatgcgtccaatagtaatgacgtacctcatttgatagcc
aaaagtttagggcatcctctccttaagagcgattcattaagcaggggggcatttgttccc
aatgacattaatattggtggccctgatcatgccacctttatcttgcttactggccctaac
atgggtggaaaatccaccctcattcgtcaaatttgtttggctgtaattttagctcaggta
ggagcggatgttcctgcagaagattttaagctatcccttgttgatcggatttttgttcgc
atgggagcaaaagatcaaattatggccggacatagtacttttctaacagagctttcagaa
actgcttccatgttgacatctgctactcatgattcattggtggcactggatgaacttgga
cgtggcacttcaacttcagatggacaagctattgcggaatcagtccttgaacattttgtg
cgggaggtgcagtgtcgtggcttgttttccactcattatcatcggttagctataaattat
aaaagagatcccaaggtatctctatgtcatatggcatgtcaagtaggacaaggaaatggc
ggtttggaagaagtcacattcctgtacaggatgactttgggagcatgtccgaaaagctac
ggtgtcaatgttgcacgaatagctggaattcccgattgtgtactccgcaaagctgctgcc
aagtcgagagaatttgagatggctttcggtaggcacagcaagagacctgataacaatgtc
cagaatagggagaatgaagctgctagcttcatccaaaatctaatcagaattacgtcacac
gctgatttgcaaacgattgcctcatttagtcagctccaacgtaatgctaggatccttttg
gaacaatgttga
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