Silene latifolia (white campion): 141656295
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Entry
141656295 CDS
T11116
Name
(RefSeq) trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
KO
K12450
UDP-glucose 4,6-dehydratase [EC:
4.2.1.76
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00541
Biosynthesis of various nucleotide sugars
slaf01100
Metabolic pathways
slaf01250
Biosynthesis of nucleotide sugars
Module
slaf_M01021
UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
141656295
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.76 UDP-glucose 4,6-dehydratase
141656295
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Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
NAD_binding_10
NmrA
Motif
Other DBs
NCBI-GeneID:
141656295
NCBI-ProteinID:
XP_074319233
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Position
5:complement(1127887..1131668)
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AA seq
674 aa
AA seq
DB search
MSSYTPKNILITGAAGFIASHVANKLIRSYPDYKIVVLDKLDYCSNLKNLRPSQKSPNFK
FVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV
TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP
VITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILH
KGEVGHVYNIGTKRERRVIDVARDVCKLFSVDPETVIKFVENRPFNDQRYFLDDEKLKIL
GWSERTPWEEGLKKTMEWYISNPEWWGDVSGALLPHPRMLMMPGGIERHFEEADNDNSAS
SELPNSQSKMVVPVAKTTPSPKKPSLKFLIYGRTGWIGGLLGQMCEKQGIAYEYGKGRLQ
DRASLIADIQNVKPTHVFNAAGVTGRPNVDWCESHKPETIRTNVVGTLTLADVCREHGLL
VMNYATGCIFEYDAAHPLGSGIGFKEEDTPNFAGSFYSKTKAMVEELLKEFDNVCTLRVR
MPISGDLTNPRNFITKISRYNKVVDIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVV
SHNEILEMYKNYIDPSFKWANFTVEEQAKVIVAARSNNEMDASKLKKEFPELLSIKESLI
KYVFEPNKKTNYSA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttacacgccaaagaacattcttataacgggtgcggctgggttcatcgcatct
catgtcgcaaacaagcttattaggagttaccccgattacaagattgtcgtgctcgacaag
cttgattattgttcaaacctgaaaaacttgcgcccttcccaaaaatctcctaatttcaag
tttgtcaagggggacattgcaagtgctgaccttgttaattatcttttgatcaccgagtcc
attgatactattatgcactttgctgcgcaaacccatgtcgataattctttcggtaacagc
tttgagttcactaagaacaacatttacggtactcatgttcttctagaggcctgtaaggtg
acaggtcagatcaggaggtttattcatgtcagtactgatgaagtttatggggagacggat
gaggatgctgtggtgggaaaccacgaagcttctcagcttctcccgacaaacccatactcg
gctacaaaggcgggagctgagatgcttgtgatggcttatggccgatcatatggcttgcct
gttatcacaacccgcggaaacaatgtttatggaccaaaccagtttcctgagaagttgatc
cctaagttcatccttttggccatgcaagggaagcctcttccgattcacggagatggttct
aatgtgagaagttatctctattgtgaggatgtcgccgaggcctttgaggtcattctccac
aagggagaagtaggccatgtgtacaacattgggacaaaaagggagaggagagtcattgat
gttgctagagatgtatgcaaattattttctgtggaccccgagactgtcatcaagtttgtc
gagaaccgtccttttaatgaccagaggtacttcctcgacgacgagaagttgaaaattttg
ggatggtcagagaggaccccttgggaagagggtctaaagaagactatggagtggtatatc
agtaaccctgagtggtggggtgatgtgtcaggagccctgcttcctcaccctagaatgttg
atgatgccaggtggcatcgagaggcattttgaggaagctgacaatgataattccgcttct
tcagaacttcccaactctcaaagtaagatggtggttcctgtcgcgaaaaccaccccctcc
cctaagaagccatcgttgaagttcctgatctatggcagaacaggctggattggtggtctc
cttggccagatgtgtgaaaagcaaggcattgcttacgagtatggaaagggccgtctccaa
gatagagcatctctcattgcagatatccagaatgtcaagccaacccatgttttcaatgcc
gctggtgtaaccggtaggcccaatgtagactggtgtgaatctcacaaacccgagactatt
cgcaccaatgtcgttggtacattgaccttggcagatgtctgcagagaacatgggttgctt
gtgatgaattatgctactgggtgcatttttgagtatgatgctgcacatcccctcggctct
ggaatcgggttcaaggaggaggacacacccaattttgcgggttcattctactccaagact
aaagccatggtagaggagttgctcaaggagtttgacaacgtttgcacccttagagtccgc
atgcccatatctggggacctcaccaacccacgaaacttcatcacaaagatctctcgctac
aataaggttgtggacatccccaacagtatgaccatcttggatgagctcctacccatctcg
atagagatggccaagcgtaatctcagaggcatatggaacttcaccaacccaggagtcgta
agccacaacgagatcctcgagatgtacaagaactacattgacccaagcttcaaatgggct
aacttcaccgtggaagagcaagccaaggtcatcgttgctgcaagaagcaacaacgagatg
gatgcctccaaattgaagaaagaattccctgagctgctcagcattaaggaatcactgatc
aaatacgttttcgagccaaacaagaaaacaaattactctgcgtaa
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