Silene latifolia (white campion): 141656323
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Entry
141656323 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141656323
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141656323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141656323
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141656323
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
141656323
Messenger RNA biogenesis [BR:
slaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
141656323
DNA repair and recombination proteins [BR:
slaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
141656323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
141656323
NCBI-ProteinID:
XP_074319274
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All DBs
Position
5:complement(1512974..1525851)
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AA seq
892 aa
AA seq
DB search
METTLKKFFGFSTFRPYQKEVIEKVLEGKDCLVVMATGSGKSLCYQVPPLIAGKTGVVIS
PLLSLMQDQVMALKQRGISADYMGSTQTDRTVQAKAETGSYSLLFMTPEKALSISKSFWT
NLLKIGICLLAVDEAHCISEWGHNFRVEYKKLDQLRPILPDVPFVSLTATATEKVRLDIV
RSLNLKDPYIAVGSFDRKNIFYGVKSISRDSSFLDELVQEVIKSVASAGSTIIYCLTVKD
VEQIHQLLQSAQVKAGMYHGQMDNRTREQTHKLFIRDELRVVVATIAFGMGIDKPDIRHV
IHYGCPKSLETYYQESGRCGRDGIASACWLYYSRSDFAKSDFYCSGLQTENQRKAVVESL
KAAQQYCLLTNCRRKFLLEHFGEKVPAEACGNCDNCTTTRKERDVSREAFLLMTCIKSCR
GNWGLNLPIDVLRGSRSKKIVEAQFDRLPLHGLGKAYSSNWWKALASVLISQGYLKETVS
DIYRFVSVSVKGAQYLSSARPDWQPPLVLPLLDEMCDEEIESSQVQVGSLKSATPSECEG
LSEDEAKLYHALLEERMKLARAAGTAPYAVCGDATIKKIALVRPSTKARLANIDGVNQHL
VVTHGDHFLQAIRNVSQTLNLSLDGEMNIQTLPTRKVTALPGNQRKLTPAKFEAWKMWHE
NRLSIQKIANFPGRSAPIKEGTVLGYLLDAAQEGFEVDWPRLCDEIELTSEMLGNIMGAV
KKVGSTEKLKPIKDELPEDVSYSHIRMCLAMMSCGISSPFEPMHSDNKTEVPKSKPSESS
PNTPTKRSCDDDQTFAKNGNSQETGLSPVDQSFDKHSSKRSKIDQEDSNNSGPLEATQSS
IAEWIQNYENGVGLDEILEHFKGSSEDDIRNLLVGLEAEFVIYQKNGMYRLF
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggagactactctaaaaaaattctttggtttctcgacgtttcggccataccaaaaggaa
gtaattgagaaagttctggaaggaaaggattgcttggttgtcatggctactggcagcggc
aaatctctttgttatcaagttccccctttgattgccgggaaaactggcgttgtgatcagc
ccactgctatctctgatgcaggatcaggtaatggctctgaaacaacgtggcatcagtgcg
gactacatgggttctactcaaacagatcgaacagtgcaggccaaagctgaaactggcagt
tatagtttgttattcatgacccctgagaaagcattgtcgatttctaagagcttttggaca
aacttgctcaagattggaatttgtcttttggccgtggatgaagcacactgcatatctgaa
tgggggcacaatttcagggtggagtacaaaaagctggaccaattgcgtccaattctccca
gatgttccatttgtcagcttgactgcaactgcaacagaaaaggttcgtttagacatagtt
agatcattgaacttgaaggatccttacattgctgttggctcgtttgatcgtaagaatatt
ttctatggtgtgaaatctattagtcgtgactcctctttcctggacgagcttgtacaagaa
gtcataaagtcagtggctagtgctggatcaacaatcatttactgcctcacagttaaagat
gttgagcagatacaccagttgcttcaaagtgcacaggtgaaggctggtatgtatcatggt
caaatggataatagaactcgggaacagacacataagttattcattagagatgagttgcgt
gtcgtagttgctactattgcttttggtatgggcattgataaaccagacataaggcatgtg
atacattatggatgtcccaaaagtttagaaacatactaccaggagagtggacgatgtggc
agagatggcatagcttctgcgtgctggctctattactctagaagtgacttcgcaaaatcg
gatttctattgcagcggcttgcaaacagaaaatcaacgaaaagctgttgtagagtctctg
aaggccgcacagcagtattgcttgctgacaaattgcagaaggaaattcttattggaacat
tttggtgaaaaagtcccagcagaagcttgcgggaactgtgataactgcaccactacacgg
aaggagcgagatgtgtcaagagaagcgtttcttctaatgacttgtattaaatcatgccga
ggaaactgggggcttaatttgcctattgatgttcttcgaggctctcggtcaaagaaaatt
gtcgaagctcagtttgacaggctcccattgcatggccttgggaaggcctactcttctaat
tggtggaaggctctagcttctgtactgatttctcaaggttatctgaaggagacagtcagt
gatatttacagatttgtgagtgtcagtgtcaaaggagcacaatacctcagttctgcacgc
cctgattggcaaccacccttggtcttgccattacttgatgagatgtgtgacgaggagatt
gaaagctcacaagttcaagtgggaagtttgaaaagtgctactccctccgagtgtgaaggt
ttatcagaggatgaggctaagctctatcatgcacttctagaagagaggatgaaattagcc
agagctgcaggaactgcgccatatgctgtttgtggcgatgcaacaatcaagaaaattgca
ctggttagaccatcaactaaagcaagactagctaacattgatggtgtcaatcagcatctt
gttgtaacccatggagatcattttcttcaagcaattcgaaacgtgtcacaaacacttaac
ttatcattggatggagaaatgaacatacaaactctaccaacaagaaaagtaactgctcta
ccaggcaaccaaagaaaactaacaccagccaagtttgaagcatggaaaatgtggcatgaa
aacagactatccattcagaagattgctaacttccctggtagatctgctccaattaaagaa
ggaactgttctaggttatcttctagatgctgcccaagaagggttcgaagtagattggcct
agactctgtgatgagattgaactaacatctgaaatgctcggaaatataatgggcgcagtt
aagaaggttggctcgaccgagaagctgaaacctatcaaagatgaattacctgaagatgta
agctactctcatataaggatgtgccttgcaatgatgagctgtgggatctcctctccgttc
gagcccatgcattcagataataaaactgaagtgcccaagtccaagccaagtgaatcgtcg
ccaaacacccctacaaagagatcttgtgatgatgaccaaacatttgcaaagaacggcaac
agccaagaaaccggtctttcacctgtggatcagtctttcgataaacatagctcaaaacga
tctaaaatcgatcaggaggacagcaacaattccggaccactggaggccactcagagttct
atagcagaatggattcaaaactacgagaatggggttggtttggatgaaatcttggaacat
tttaaaggttcaagtgaagacgacataaggaatttgctcgttggcctagaggctgagttc
gtaatataccaaaagaacggcatgtatcggcttttctga
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