Silene latifolia (white campion): 141657127
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Entry
141657127 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141657127
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141657127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141657127
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141657127
mRNA degradation factors
5'-3' decay
Decapping complex
141657127
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
COG4_C
DUF5578
Phage_CP76
Motif
Other DBs
NCBI-GeneID:
141657127
NCBI-ProteinID:
XP_074320362
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Position
5:28520047..28527312
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AA seq
906 aa
AA seq
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MDMSYEELYIRRKEKFRELVQMQRDMAATDYPFTISSAKQFKALRMLQNNGVWKGDHVYI
SPDLSPKEQKSLFKFAKKYANKFKVRYPDTSASSTVNPNPKLDCNSDPVNGGTVEKGGSN
DVGNCALNGVGGGAMEKGESECRIEEVVLSNDAGNSILKGSEQGGAMEEGESECKIKEVI
LSNDAENSILKDLEEGGAVEKGESEGRIKDVGNGVFKGLEQGLNLGEVGHEATEDICGKY
LKEMNSQPSPSPSPSVSLSPSQSVGTDLGEVKGGSSISSFDKACQQIVATAEIVKEVRYP
DTSASSTVNSNPKLDCNSDPVSGGAVEKGGTNDIGNCALNGVGGGAMEKGESECRIEEVV
FSNDAGNSNLKCSEQGGAVEKGEDECRIKEVILSDDAGNSILKGLEQGGTVEKGESEGRI
KDVGNGVFKGLEQGLNLGEVGHEASEDICGKYPKERNSQPSPSVSLSLLPSQSLGTDFGE
VKGSSSIPSFDEACQQIVATAEIVKEMKASFKEIQEMQKQMSMTLAVPIAQEGRKIEEAI
CQCVEKATRANGDVLLARIQENMAKHEHMTRDQIQWMIGWINNLVDKEFLHVFERLLKKE
LAFVGTNITSAVSTTIKKNISSAIIDSVQQGVSDKVADQLEKLITSKIEATFATQIQAQF
KSSAKQTFQDRWKFCFKTIVIPALERTCKAMFKKFDVIFQKEIIGHARAAEHQVNKTLYP
LALALMDTLDYTSFLSQALSRELADGQGKLVALALHESVDKSPFDPTIELSRLIAEQKYE
EAFASALQRSDVSIVWWLCSQVDLQQMLCIIPVPLSQEILLYLLHQLACDISKDTVRKLA
WMTDVASSILPHDRMIADHARPILEQVYQILNHQRSLPSTTPAITSSVRVIMHIINSMLR
TCKCCH
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggatatgagctatgaagagctctatattcggcgaaaagaaaagtttagagaattggta
cagatgcaacgtgatatggcggcgactgattatccatttactatctcttctgctaaacaa
ttcaaagctttgaggatgttacaaaacaatggcgtttggaaaggcgatcatgtttacatt
tcccccgatctttctcctaaagaacaaaaatctttgtttaaatttgctaaaaagtatgct
aacaaattcaaggttcgatatcctgatacatctgcttcgtctactgttaaccctaaccct
aaacttgattgtaattctgacccagttaatggtggtactgtggaaaagggggggagtaat
gacgtcggaaattgcgctttgaacggtgtaggtggtggtgctatggaaaagggggagagt
gaatgtaggattgaagaggtagttttgagtaatgatgctggaaatagcatcttgaagggt
tcagaacaaggcggtgctatggaagagggggagagtgaatgcaagattaaagaggtaatt
ttgagtaatgatgccgaaaatagcatcctgaaggatttagaagaaggtggtgctgtggaa
aagggggagagtgaaggtaggattaaagatgtcggaaatggcgtgttcaagggtctagaa
caaggtttaaatttaggtgaggtgggacatgaagccactgaagatatttgtgggaaatat
ctgaaagagatgaactctcaaccatctccatccccatctccgtcagtgtcattgtcgcct
tcccaaagtgttggtactgatttaggggaagttaagggtgggtcaagcatttcatctttt
gacaaggcatgtcaacaaattgttgctacagcagaaattgttaaagaggttcgatatcct
gatacatctgcttcgtctactgttaactctaaccctaaacttgattgtaactctgaccca
gttagtggtggtgctgtggaaaagggggggactaatgacattggaaattgcgctttgaac
ggtgtaggtggtggtgctatggaaaagggggagagtgaatgtaggattgaagaggtagtt
ttcagtaatgatgccggaaatagcaacttgaagtgttcagaacaaggcggtgctgtggaa
aagggggaggatgaatgtaggattaaagaggtaattttgagtgatgatgccggaaatagc
atcctgaagggtttagaacaaggtggtactgtggaaaagggggagagtgaaggtaggatt
aaagatgtcggaaatggcgtgttcaagggtctagaacaaggtttaaatttaggtgaggtg
ggacatgaagccagtgaagatatttgtgggaaatatccgaaagagaggaactctcaacca
tctccgtcagtctcattgtcattgttgccttctcaaagtcttggtactgattttggggaa
gttaagggcagctcaagcattccatcttttgacgaggcatgtcaacaaattgttgctaca
gcggaaattgttaaagagatgaaggcctcttttaaagaaattcaagaaatgcagaaacag
atgagcatgacacttgctgttccaattgctcaagaaggtcgaaaaattgaggaagctata
tgtcagtgtgtggagaaggctactagggctaatggcgatgtgctattggctcgtatacag
gaaaatatggctaaacatgaacacatgacacgagatcagatccagtggatgattggttgg
ataaataatctggtggacaaggagtttctccatgtgtttgagagactattaaagaaagaa
ttggcttttgttggtacaaacataacttctgcagtaagcacaactattaagaaaaatatc
tcgtctgccattatcgattccgtccagcaaggggttagtgacaaggtagccgatcaacta
gagaaattgataacttcgaaaattgaagctacatttgcaacgcagatacaagcccagttc
aagtcttctgctaaacaaacatttcaggatagatggaagttttgttttaaaacaatagtc
atccctgctttagagaggacatgcaaagctatgtttaagaaatttgatgttatatttcaa
aaggagattattggacacgcacgagcagcagaacatcaagtcaataaaacactttatccg
ttagcccttgctctcatggatactcttgattacacatcatttctctcccaagccttgagt
agagaattggcagatggtcaaggaaagctggtagctcttgctctgcatgagtcggttgat
aaatcaccatttgatccaactatagaactatcaagattgatagctgaacagaagtatgag
gaagcatttgcatcagcattgcaaagaagtgatgtgtcgattgtttggtggttatgttca
caggttgatcttcagcagatgctctgtattattccggtccctttgagtcaagaaattctg
ctttatcttctacatcagcttgcttgtgatatatcaaaggatactgttagaaagttagcg
tggatgacagacgtggcttcttccatattaccacatgacaggatgatagctgatcatgcc
cgtcccattttggagcaggtctatcagatcttgaaccatcaacgtagtcttccgagcacc
acacctgccataacatcaagtgtccgggttattatgcacatcataaactcaatgcttagg
acctgtaagtgctgccattaa
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