Silene latifolia (white campion): 141657508
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Entry
141657508 CDS
T11116
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
141657508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141657508
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
141657508
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_14
Motif
Other DBs
NCBI-GeneID:
141657508
NCBI-ProteinID:
XP_074320870
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Position
5:complement(69483635..69488596)
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AA seq
606 aa
AA seq
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MELQSSKSHKPLKTTPYQQPTTTTSFPEEALEHVLSFIESHSDLNSVSLVCKSWYDVDRW
SRRRIFIGNCYAVSPNNVLRRFKDVRSVTIKGKPHFADFNLVPDGWGAHAFPWISALCHG
FPLLEEFRFKRMVVTDEGLELIAKKLKNFKVIVLSSCDGFSTNGLASIAANCRNLRTLDL
CESEVDDRSGNWINDFPDSYTSLESLNIACLSSELRFCSLERLVGRCPNLKSLRVNRGVP
LEKLAGLLEKVPQLTDFGTGSFVTELSTEAHSKLAKAFSGCKGLKGLSGLYDVVAHYLPA
LYPVCSGLTSLNLSYAAIHSPDLIELLCHCPSLQRLWVLDYIEDNGLEMLAQSCKDLREL
RVFPSEPYIQEPNVCLTEHGLVSVAMGCPKLQSVLYFCRQFSNEALFTIAKYRPNLTRFR
LCIIEPQCPDYQTNEPLDDGFGAIVENCKDLRRLSLSGLLTDRVFEYIGTHAKKLEMLSL
AFAGETDLGLHCVMSGCKNLRKLEIRDCPFSGRALLVNAGKLETMRSLWMSSCQVSYGEC
KMLGKKMPRLNVEVMDERGLPDSRSDDCPVEKLYIYRSLVGPRVDSPAFVWTINENAASE
PRIVNE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggagctccaatcctcaaaatcccacaaacccctcaaaacgacaccgtatcaacaaccc
acaacaacaacctcatttccagaagaagccttagaacacgtgctctccttcatcgagtca
cactcggacctcaactcagtctcactcgtctgcaagtcatggtacgacgttgacaggtgg
tctcgtcgccgtatattcatcggaaactgctacgctgtgtcgccgaataatgtgttgcgc
aggtttaaggatgttcggtcggttactataaaaggaaagcctcattttgctgacttcaac
cttgtacctgatggttggggagctcacgctttcccttggatatcggcgctttgtcacggg
tttccgttgttggaggagtttagatttaagaggatggttgttactgatgaaggtcttgag
ctgattgctaaaaaattgaagaattttaaagttattgtgttgtcttcttgtgatggattt
tctactaatggtttggcctctattgctgctaattgcaggaacttgaggactcttgactta
tgcgagagcgaagtcgacgaccgaagtgggaattggataaacgattttccagactcctac
acatccctagaatctcttaacattgcctgccttagctcggagctaagattctgttctctg
gaacgtttggtcggcagatgcccgaaccttaaatcacttagagttaaccggggtgtccca
ctggagaagctggctggtcttttggagaaggttcctcaattaaccgactttggtacaggt
tcatttgtgacagagctaagtaccgaagcccattcaaagctcgcaaaggctttttcagga
tgcaaaggcttgaaaggcctttccggcctttatgatgtggttgcacattatcttccagca
ctctatcctgtgtgctctgggcttacttctttaaatctgagttatgccgccattcactcc
ccggatttgattgagcttctatgtcactgtcccagtctccagcgtctctgggtacttgac
tacattgaagacaatggccttgaaatgcttgctcagtcttgcaaagaccttcgagagtta
cgggttttcccatctgaaccatacattcaagaaccaaatgtttgcttgacggaacatggg
cttgtctctgttgccatgggttgccctaaactccaatctgttctgtacttctgtcgacaa
ttttccaatgaagccttgtttaccatagccaagtatcggcccaacctaacccgcttcagg
ctctgcattattgagcctcagtgccctgactaccaaaccaatgagccattggatgacggt
ttcggagccattgttgagaactgcaaggatttgagacgtctttccttgtcaggcctcctc
acagaccgtgtatttgagtacattggcacacatgccaagaaactcgagatgctctctctt
gcatttgccggagagactgatttgggtctccattgtgttatgtcgggatgcaagaacctt
cggaagcttgagattagggactgcccttttagtggaagggcacttttggtaaatgcaggg
aagctggagacaatgcgatccctttggatgtcttcgtgccaagtgagctacggggagtgt
aagatgcttggcaagaagatgccgaggctcaatgtagaagttatggacgagagggggctt
ccagattctaggtctgatgactgcccagttgagaagctttatatctaccgctcacttgtc
gggccgagggttgactctccagcgtttgtgtggacaataaatgaaaatgcagcatccgaa
ccaaggatagtcaatgaatga
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