Silene latifolia (white campion): 141657545
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Entry
141657545 CDS
T11116
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141657545
03460 Fanconi anemia pathway
141657545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slaf03032
]
141657545
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141657545
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
141657545
DNA replication proteins [BR:
slaf03032
]
Eukaryotic type
DNA Topoisomerases
141657545
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
141657545
FA (Fanconi anemia) pathway
141657545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF
zf-CCHC
Zn_ribbon_GRF_2
Rpr2
Motif
Other DBs
NCBI-GeneID:
141657545
NCBI-ProteinID:
XP_074320919
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Position
5:72212386..72225847
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AA seq
922 aa
AA seq
DB search
MAGNRPIRALNVAEKPSVAKAVSAILSGNRARMREGRSRYNKIYEFEYTIRGQPCHMLFT
SVTGHLMELKFDDRYRKWHGCDPADLYQAPVHKFVPEDKLDIKRTLQQEIRNCQWLILWL
DCDREGENIAFEVVDVCTEVNHNLNILRARFSALIDRAIHEAVQNLDRPNKLFADAVDAR
QEIDLRIGASFTRFQTMLLKDAFDLNIDTADRNIILSYGPCQFPTLGFVVERYWEIQAHE
AEEFWTIKCSHNSEEGIATFSWIRGNMFDYTCAVTIYEMCVEEPTATVTQVRKQEKLKYP
PYPLSTIELEKRASRYFRMSSEQTMKVAEELYQSGFISYPRTETDSFSTSTDLRAIVQEQ
EGHPIWGQYAQRLLNPEQDLWRNPGSGGHDDKAHPPIHPTKFSAGESGWSQDHHKVYELV
VRHFLACVSQPAVGAETVVEIDIAGELFSASGRMIILKNYLDVYRYETWAGSVIPTFLVG
QQFAPTTLSLDSGVTRPPPLLSEADLLSCMDKSGIGTDATMHDHIKKLLDRCYATKDANT
RFSPTNLGEALVMGYDDMGYELWKPYLRSKMEDDMKAVSLGTKRKTDVLASGLLEMKTCF
LDARQSKVKLFEAMEVFFDRTNRTGMEEQHALGVARRCGLCQETDMVLKRKPDGNFMVGC
LGYPQCRNVVWLPGSISEAAVTSNTCTSCLPGPVFLIQFKFRRSEIPPNYNVDHLGCIGG
CDDTLRQLTEICGTGSRNLSGMSASARGRNSTTSGSNPTSNVRHTACTHCRQTGHNSNNC
PSQVSTSGSARSQGTNSQNGVSSVACNSCGEPCVLRTANTANNRGRNFYSCRPECRFFVW
EDMIQNDARQQGPSHTNGRGSNSNSRGRGSRGRGRGSRGGGGGGGGRGNAGTFVSATGDP
VRSCYNCGDPSHFANACPNRGN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaatcgtccgattagagctctaaacgttgcagagaagccttcagtggcgaaa
gccgtgtccgcaattctctccgggaaccgtgctaggatgagagaaggtaggtcaaggtac
aacaaaatttacgaatttgagtatacaattcgtggtcaaccttgccatatgctcttcact
tccgtcaccggtcacttgatggaactcaaatttgatgatcgctatcgtaaatggcatggc
tgtgatcctgctgatctttatcaagctcctgttcacaaatttgtacctgaagataaattg
gacatcaagcggacacttcagcaggaaattaggaactgccagtggctaattctatggctc
gattgtgatagagaaggagaaaatattgcatttgaggtggttgacgtctgcactgaagta
aaccacaatttgaatatattgagggctcgtttctctgcattgattgacagggctatccat
gaggcagtgcagaaccttgatcgtccaaataaactgtttgctgatgctgtagatgctagg
caggagatagatctacgtattggtgcttctttcacaaggttccagactatgcttcttaag
gacgcttttgacttaaatattgatactgctgacagaaacattattttgagttatgggccg
tgtcagtttcctacacttggctttgtcgtggaaaggtattgggaaatacaagctcatgaa
gcagaggagttctggacaatcaaatgttctcataactcggaagaaggaattgctaccttt
agttggatacgtggcaatatgtttgactatacctgtgcagtaaccatttatgaaatgtgt
gttgaagaacccactgcaactgttacacaggttaggaaacaagaaaaactgaagtatcct
ccttatccattgagtacgattgagcttgaaaaacgtgcatctcggtactttaggatgagt
tcagagcagacaatgaaggtggcagaggaattgtaccaatccggtttcattagctatcct
cgaactgaaactgacagtttttcaacctcaactgatctgcgtgcaattgtgcaagaacaa
gaaggtcatcccatttggggccaatatgctcagcgtttattaaatcctgaacaagatctt
tggaggaatccaggaagtggaggccacgatgacaaggctcatccacctattcatccgaca
aaattttctgctggagagtctgggtggagccaagatcaccataaagtatacgagttagtt
gttcggcatttcctggcatgcgtctctcaaccagctgtaggggctgaaactgttgtagaa
atagatattgctggtgaactcttttctgcctctgggagaatgataattttgaaaaattat
ctggatgtttatagatatgaaacttgggctggttctgtgatcccaacttttctggttgga
cagcagtttgctccaactacattgagtctagactcgggagttaccaggccaccaccgcta
ttaagtgaagctgatctgctgagctgcatggacaaatcaggaattggaactgatgcaacc
atgcatgatcacatcaagaagctactggatcgttgttatgctactaaagacgcaaatact
cgtttttcacccactaatcttggagaggcattagttatgggatatgatgatatgggttat
gagctctggaaaccctatctcagatccaaaatggaggatgatatgaaggctgttagctta
gggactaagcgaaaaactgatgtactggcgtctggtttactggaaatgaagacttgtttc
ctagatgctaggcagagcaaagtaaaactctttgaagctatggaagtcttttttgacaga
actaacagaactgggatggaggagcagcacgctctaggagttgctcggcggtgtggcctc
tgccaagagacggatatggttcttaagcggaagccggatggaaattttatggttggatgc
ttaggttatccccagtgtaggaatgttgtgtggctacctgggtctatttctgaagcagct
gtcacatctaatacatgcacctcatgcttgccaggtccagttttcttgattcagttcaag
ttccgccggtcagaaatacctccaaattacaatgttgaccacttaggctgcattggcgga
tgtgatgacacactcagacagttgactgagatatgtggaacgggttctcgcaatctttct
ggaatgtcagcatcagcgagaggccgaaattcaacaacttctggcagcaacccgacaagc
aatgtaaggcacactgcatgcacccattgcagacagacaggacataattcaaataattgt
ccttcccaagtctcaacatctggaagtgcaaggtctcaaggaactaacagccaaaatggg
gtttcatctgtagcttgtaattcttgtggagaaccgtgtgtattacgaacagcaaatact
gcaaataataggggcagaaacttctattcatgtcgaccggagtgcagattctttgtgtgg
gaggatatgattcaaaatgatgccagacaacaggggccctcccataccaatggtagaggc
tcaaattctaatagcagaggaaggggtagccgtggcaggggtcgtgggagtcgtggtggt
ggtggtggtggtggtggacgtggtaatgcagggacatttgtgtcagcaactggtgatcct
gtcagaagttgctacaattgcggtgatccgtctcactttgcaaatgcatgtcctaaccgt
ggcaattaa
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