Silene latifolia (white campion): 141657649
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Entry
141657649 CDS
T11116
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
slaf01009
]
141657649
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141657649
Enzymes [BR:
slaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
141657649
Protein phosphatases and associated proteins [BR:
slaf01009
]
HAD phosphatases
Fcp/Scp phosphatases
141657649
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
141657649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
141657649
NCBI-ProteinID:
XP_074321046
LinkDB
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Position
5:82631256..82636516
Genome browser
AA seq
749 aa
AA seq
DB search
MGKGGVTTVPEAVHKIQLALLDGINDENQLFAAGSLICRNDYNDVVTERTISGLCGYPLC
PNELPPEPPKKGNYRLSLKEHKVYDLKETYLYCGSKCMISSKAFAGSLLEERCVILNAAK
VHAVLRLFDSVGLSSDDDEDEDEESVAKAKLVIKDKDGVKGGDVRAEEWMGVSNAIEGYV
PQRDRKSKSSEKGEELMISACSCHDKNVFQNEVDFDVAVKPNEKITGKKVLNKDKSTQRN
HSESLEPLLSEINFTSTIITNDEYAVTKEKPNGGSKPVPSGARKAKFSAPKRHGSKKGKD
SVFGNMDFTSTIITEDEYSVSKRLPSQPISDQDQVAQELSAKLNLADSEKQFKCPDNPVD
LEKKFCQRSTKSAVDGSACAENEKGKLAKAPFRHSENDASSSSGYVKDDSLTAHEIHSSK
AKSKSSLRTSGSKRAARSVTWADEKPNGVASGNLSEFKEIKDTKEPISLRSKVEEDNQES
RRFASAEACAAALSQAAETVASGQSDATDAVFEAGITVLPEHEIDGTEECSVEDGALEER
ETVKWPEKLDNPDSDAIDSDNSFFDAAPEGFSLTLSPFAMMWNALFSWLTSSSLAYIYGR
DDNFHEEYMSFNGREYPSKVVLPDGCSSEIKKTLAGCLSRALPGLIAELKLPTPLSTLEH
GLTCLLDTMSFMDPLPPFRMKQWQVIVLLFIDALSVCRIPGLSPHLTSRRILIPKVLSAA
QFSTEEYEIMKDMLIPLGRVPQFAMQSGG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaggcggagtaacgacagtaccagaagcagtgcacaagatacaattagccctt
ctcgatggaattaacgatgaaaaccagctatttgcagctggttcattaatatgtaggaat
gattacaatgatgtagttacggagcgtacgatatcgggtttatgtggttaccctttatgc
cccaatgaattaccccctgagcctcctaagaaggggaattaccgcctttcgcttaaggaa
cacaaggtgtatgatttgaaagagacttatttgtattgtgggtcgaaatgtatgattagt
agtaaggcatttgctgggagtttgttagaggagaggtgtgttattttgaatgctgctaag
gttcatgctgttttgaggttgtttgatagtgttgggttgagtagtgatgatgatgaggat
gaagatgaagagagtgttgcgaaggcgaaattggtgattaaggataaggatggggtgaaa
ggtggggatgtcagagctgaggagtggatgggtgtgtctaatgctattgaagggtatgtt
cctcaacgtgatcgtaagtcgaaatcttctgagaaaggtgaggaattgatgatttcagct
tgttcatgtcatgataagaatgtatttcaaaatgaggttgattttgatgttgctgtgaaa
cctaatgagaaaattactggcaagaaggttctgaataaggataaatcgactcaacgtaat
cattcagaatctttggagcctttgcttagtgagataaatttcacaagtaccataataacc
aatgacgaatatgctgttacgaaggagaaacccaatggtggttccaagcctgtgccttct
ggagctaggaaagctaaattctcggcaccaaaaaggcatggctctaaaaaggggaaggat
tctgtatttggcaatatggattttacgagtactataataactgaagatgagtatagtgtt
tccaaaaggcttccaagtcaacctatctcggatcaagatcaggttgcacaagagttatct
gcaaaactgaatcttgcagattcagaaaagcaatttaaatgcccagacaatcctgtagat
cttgaaaagaaattttgtcagaggtctacaaagtcagcagttgatgggtctgcatgtgcg
gaaaatgagaagggaaaattagctaaagctccttttcgtcacagtgaaaatgatgccagt
tctagttctggatatgtaaaagatgattcacttactgcacatgaaattcactctagtaaa
gccaaatccaagtcttctcttagaacctcagggagtaaaagggccgctcgttctgtcacg
tgggctgatgagaagcccaatggtgttgctagtggaaatctcagtgagtttaaagaaatt
aaagatacaaaagagcctatttctctaagaagcaaagtggaggaggacaatcaggaatca
cgacgatttgcatcagctgaagcctgtgcagcggctttgagccaggccgcagagactgtt
gcatctggacagtctgatgctactgacgctgtatttgaggctgggatcacagtgctccca
gagcatgagatagatggtaccgaggaatgttcagtcgaagatggagcgttagaggaaaga
gaaactgtgaagtggcctgagaagctagacaaccccgattctgacgccattgactctgat
aattcattttttgatgctgcgccagagggattcagcttaacgttatcgccttttgccatg
atgtggaatgcactattttcttggctgacctcatcctcattggcctacatatacgggaga
gatgacaatttccatgaagaatatatgtctttcaatggaagagaataccctagcaaagtt
gtgcttcctgatggctgttcttcagaaatcaagaaaactctagctggttgtctttcccga
gccttgcctggattgatagctgaacttaagctgccaacaccattatctactttggaacat
gggctgacttgcttactggatacaatgtcttttatggatccactccctccattcagaatg
aagcagtggcaagtgattgttctcctattcattgatgctctttcagtttgtaggattcct
ggattaagtccacacttgacaagcagaaggatcttgattcccaaggttttgagtgctgct
cagtttagtaccgaagagtatgagatcatgaaagatatgttgattccattgggccgtgtg
cctcagtttgccatgcagagtggtggttga
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