Silene latifolia (white campion): 141657871
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Entry
141657871 CDS
T11116
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141657871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141657871
03110 Chaperones and folding catalysts [BR:
slaf03110
]
141657871
03029 Mitochondrial biogenesis [BR:
slaf03029
]
141657871
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slaf04147
]
141657871
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
141657871
Messenger RNA biogenesis [BR:
slaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
141657871
Chaperones and folding catalysts [BR:
slaf03110
]
Heat shock proteins
HSP60 / Chaperonin
141657871
Mitochondrial biogenesis [BR:
slaf03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
141657871
Exosome [BR:
slaf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
141657871
Exosomal proteins of other body fluids (saliva and urine)
141657871
Exosomal proteins of breast cancer cells
141657871
Exosomal proteins of colorectal cancer cells
141657871
Exosomal proteins of bladder cancer cells
141657871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
141657871
NCBI-ProteinID:
XP_074321354
LinkDB
All DBs
Position
5:complement(90427303..90433057)
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AA seq
604 aa
AA seq
DB search
MASTFSGISTVGSLATPTPHKLLASSNNLSSFASISSAALGRRHNVLPPKSRSLRINSMA
KDLYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVE
LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE
KTAKALVAELKAMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGKG
AENILSVVEGMQFDRGYISPYFVTDAEKMSVEYENCKLLLVDKKITNARDLVNILEDAIR
GGYPVLIIAEDIEQEALATLVVNRLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIR
DEVGLTLDKVGKEVLGHAAKVVLTKDSSTIVGDGSTQEAVNKRVTQIKNLIEVAEQEYEK
EKLTERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL
SSKVDAIKEKLDNAEEQVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNLRYGYN
AATGQYEDLMSAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVGAGNPMDNS
GYGY
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacattcagtggcatttccacagtgggttccttggctacacccacaccacat
aagcttcttgcttcttctaacaacttgtcctctttcgcctccatttcttcggctgccctg
ggtagacgacacaatgttcttcctcccaagtcacgttctttaaggattaactccatggct
aaagacctgtactttaacaaagatgggtctgctattaagaagttgcaaaatggagtgaac
aaactagccgatttggttggagttaccctaggtccaaagggccgtaatgtagttcttgag
agcaaatatggctcccctaagattgttaatgatggagtcactgtcgccaaagaggttgag
ttggaagacccagttgaaaatattggtgcaaagttagtgaggcaggcagctgccaagacc
aatgatttggctggagatggaaccaccacgtctgtggttcttgcacaaggccttattgct
gaaggtgtcaaggtggtagcagcaggtgcaaaccctgttttgatcacccggggcattgag
aaaaccgcaaaggcattagtggctgagcttaaggcaatgtcgaaagaggttgaagacagt
gaacttgctgatgtggcagctgttagtgctggcaacaactatgaaattggtaatatgatt
gctgaagcaatgtccaaggttggaaggaaaggtgtggtaacacttgaagaaggaaaaggt
gctgagaacattctttctgttgtggaagggatgcaatttgatcgtggttatatttcacct
tactttgttactgatgctgaaaaaatgtccgtggagtatgagaactgcaagttgctttta
gtcgataaaaagataacaaatgcaagagatcttgttaacattttggaagatgccatcagg
ggtggatatcctgtgctaattattgcagaagatatcgagcaagaagctttggccactctt
gttgtaaataggttgagaggctctttgaaaattgcagcgctaaaggctcctgggtttggt
gaacgcaaaagccagtatcttgatgatattgctatacttaccggaggaactgtgattagg
gatgaggttgggctaacactggacaaagttggtaaggaagtcttgggtcatgctgctaaa
gttgtccttacgaaggattcgtcaacaattgtgggtgacggcagcacacaagaagctgtg
aataaacgggttacacaaataaaaaatcttattgaggttgcggagcaagaatatgaaaag
gaaaaacttactgagagaatcgccaaactcgctggtggtgtcgctgtgattcaggtggga
gcacaaactgaaacagagctgaaagaaaagaagttgagagtagaagatgctttgaatgcg
acaaaggcagctgtggaagaaggaattgttgttggtggtggatgtactttacttcggctc
tcttccaaagttgacgctatcaaggagaagctcgataatgcagaagaacaggttggagca
gatattgtgaagagggcacttagctatcccttgaaattaatcgccaaaaacgctggtgta
aatggaagtgttgttagtgaaaaggtgctttcaagtgacaatctgaggtacggatacaat
gctgctaccggacaatatgaagacttaatgtctgctggaattattgacccgacaaaggtg
gtgagatgctgcttggaacatgcatcttcggtggcaaaaacatttttgatgtcggactgt
gtggtggtcgagattaaggaacctgagccagttggtgctggaaatccaatggacaactca
ggatacggttattag
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