Streptomyces laculatispora: P8A22_18605
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Entry
P8A22_18605 CDS
T09657
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
slai
Streptomyces laculatispora
Brite
KEGG Orthology (KO) [BR:
slai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slai03019
]
P8A22_18605 (hrpA)
Enzymes [BR:
slai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P8A22_18605 (hrpA)
Messenger RNA biogenesis [BR:
slai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P8A22_18605 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
PhoH
ResIII
DUF6139
NTPase_1
SLFN-g3_helicase
TsaE
SRP54
Motif
Other DBs
NCBI-ProteinID:
WLQ41813
LinkDB
All DBs
Position
4247399..4251355
Genome browser
AA seq
1318 aa
AA seq
DB search
MSTSFADLQSQLGQLSLRDAHRLGRRLEGARRIRQPAAQQGVLDEIAAQATKAAGRLALR
AGRLPALSYPEQLPVSQKKDEILEAIREHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELNTPLGEAVGWKVRFTDQVNQDATFVKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPQRFARHFGE
APVVEVSGRTYPVEVRYRPLMEEAAEDTDDSDRDQITAICDAVDELQSEGPGDVLVFLSG
EREIRDTADALGKRNLRHTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IKYVIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALEQEE
KSPQEGKRGQRLTSLGRQLSQLPVDPRLARMVIEADRNGCVREVMVIAAALSIQDPRERP
SEKQTQADQQHARFKDETSDFMAFLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREW
QDIYAQLRTVAKQMGLELEESSTGTDAPEQSVHTSLLAGLLSHIGLKDTEKNEYVGARNA
KFAIFPGSALFKKQPRFVMSAELVETSRLWARVNARVEPEWIEPLAQHLLKRTYSEPHWE
KDQAAVMAFERVTLYGVPIVAQRKINFGRIDQETSRDLFIRNALVEGDWRTHHQFFHDNR
KLLGEVEELEHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKRRDEPDALDF
ERSMLINEKAGSVTKDDYPDSWRQGKLKFRVTYQFEPGADADGVTVHIPLQVLNQVTSEG
FDWQIPGLREEVVTELIRSLPKPIRRHYVPAPDYADKFLDRAVPLQEPLPVTLARELQRM
VGVPVTADDFDLSRVPDHLKITFRIVDERRRKVAEDKDLEALKIQLRPKARQALSKAAAA
TAGPTGESIERSGLTDWTIGTLDRIFETRRAGQPVKAYPALVDQGETVAVRLFDTEAEQQ
QAMWRGTRKLILLNIPVNPAKFASDKLTNQQKLALSRNPHGSIQALFDDCATAAADRLIA
VHGGPAWDEASFRKLYDKVRADLVDLTVRTIGQVQQILAAWQACERRLKATNSLVLINNV
TDVREHLARLVPPGFVTATRLRRLPDLMRYLVAEDRRLQQMPTNVQRDTSRMEKVHEMQD
EYAWLLEQLPRGRPVPQEVLDIRWMIEELRVSYFAHALGTAFPVSDKRIVKAIDAAAP
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgatctccagtcccagctcgggcagctctcgctgcgcgacgcc
caccggctcggccgccgcctcgaaggggcgcgccgcatccgtcagcccgcggcccagcaa
ggcgtgctggacgagatcgccgcccaggccacgaaggcagccgggcggctcgccctgcgg
gccgggcggctgcctgccctctcgtacccggaacagcttccggtcagccagaagaaggac
gagatcctggaggcgatacgcgagcaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagaccacccagatccccaagatctgcatggagctggggcgtggcgtccgcggcatg
atcgggcacacccagccgcgccggatcgcggcccgcacggtggccgagcggatcgccgag
gagctgaatacgccactgggcgaggcggtgggctggaaggtccgcttcaccgaccaggtg
aatcaggacgcgaccttcgtcaagctcatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgctcgcgtacgacacgatcatcatcgacgaggcccacgagcggtcg
ctgaacatcgacttcctgctcggctatctggcccggctgctgcccaagcgcccggatctg
aaggtcgtcatcacctcggcgacgatcgacccgcagcgtttcgcacgccacttcggcgag
gccccggtcgtcgaggtcagcggccgtacgtacccagtggaggtgcggtaccgccccctg
atggaggaggccgccgaagacacggacgactccgaccgcgaccagatcaccgcgatctgc
gacgccgtcgacgagctccagtcggagggccccggcgacgtcctggtcttcctctccggg
gagcgggagatccgcgacaccgcggacgcgctgggcaaacgcaacctccggcataccgag
gtgctccccctctacgcgcgcctgtcgcacgccgagcagcaccgggtgttccagcgccac
acgggacgcaggatcgtgctggcgaccaatgtcgccgagacctcgctgaccgtccccggc
atcaagtacgtgatcgacccgggcaacgcccgtatctcccgctacagccaccgcaccaag
gtccagcggctgccgatcgagcggatctcgcaggccagcgccaaccagcgcaagggccgc
tgcggccgtacgtcggacggcatctgcatccggctgtactccgaggacgacttcctgacc
cgtccggagttcacggacccggagatcctgcggacgaacctggcctccgtcatcctccag
atgaccgcggccggcctcggcgacatcgagaagttccccttcatcgatccgccggaccac
cgcaacatccgcgacggtgtgcagctcctccaggagctgggcgcgctggagcaggaggag
aagtccccccaggagggaaagaggggtcagcgcctcacttcgctcggccgccagctctcc
cagctgccggtggacccgcgcctggcccggatggtcatcgaggccgaccgcaacggctgt
gtccgcgaggtcatggtcatcgccgccgcgctctccatccaggacccgcgcgagcggccg
tccgagaagcagacgcaggccgatcagcagcacgcccggttcaaggacgagacgtccgac
ttcatggcgttcctcaatctgtggcgctacatccgcgagcagcagaaggagcgcggctcc
tccagcttccgccggatgtgcaagcaggagtacctgaacttcctgcgcatccgcgaatgg
caggacatctacgcgcagctgcgcacggtggccaagcagatgggactcgagctggaggag
tcctcgacgggtacggacgcccccgagcagtcggtgcacacctcgctgctggccggtctg
ctgtcgcacatcgggctgaaggacaccgagaagaacgagtacgtcggtgcccgcaacgcc
aagttcgcgatcttccccggatcggccctcttcaagaagcagccgcggttcgtgatgtcg
gccgagctggtggagacgtcccggctgtgggcgcgggtcaacgcccgggtcgagccggag
tggatcgagccgctggcccagcacctgctgaagcgcacgtacagcgagccgcactgggag
aaggaccaggcggcggtgatggcgttcgagcgggtcacgctgtacggcgtaccgatcgtc
gcccagcgcaagatcaatttcggccgtatcgaccaggagacctcgcgggacctcttcatc
cgcaacgccctggtcgagggcgactggcgcacgcaccaccagttcttccacgacaaccgc
aagctcctgggcgaggtcgaggagctggagcaccgtgcccggcgccgcgacatcctcgtg
gacgacgagacgctcttcgacttctacgaccagcggatcccggagcacgtcgtctcgggt
gcgcacttcgactcctggtggaagcacaagcgccgcgacgagccggacgcgctggacttc
gagcgctcgatgctcatcaacgagaaggccgggagcgtcaccaaggacgactacccggac
tcctggcggcaggggaagctcaagttccgggtgacgtaccagttcgagcccggcgcggac
gccgacggcgtgaccgtccacatcccgctccaggtgctcaaccaggtcacatcggagggc
ttcgactggcagatcccgggcctgcgcgaggaagtggtcaccgagctgatccgctccctg
cccaagccgatccgccggcactacgtgcccgccccggactacgcggacaagttcctggac
cgggccgtccccctccaggagccgctgccggtcaccctcgcccgcgagctccagcggatg
gtcggcgtcccggtcaccgcggacgacttcgacctgagccgcgtcccggaccacctgaag
atcaccttccggatcgtcgacgagcggcgccgcaaggtcgccgaggacaaggacctggag
gcgctgaagatccagctgcgccccaaggcccggcaggccctctccaaggccgccgcggcg
accgcgggccccacgggcgagtccatcgagcgttcgggcctcacggactggacgatcggc
accctggaccggatcttcgagacccggagggccggccagccggtgaaggcgtatccggcc
ctggtcgaccagggcgagacggtcgccgtacggctcttcgacaccgaggccgagcagcag
caggcgatgtggcgcggcacccggaagctgatcctgctgaacatcccggtgaacccggcg
aagttcgcctcggacaagctgacgaaccagcagaagctggccctgtcccgcaacccgcac
ggctccatccaggcgctgttcgacgactgcgcgaccgccgccgccgaccggctgatcgcc
gtgcacggcggccccgcctgggacgaggcgtcgttccgcaagctgtacgacaaggtgcgc
gccgatctggtggacctcaccgtccgcacgatcggccaggtgcagcagatcctggcggcc
tggcaggcgtgcgagcgccggctgaaggccaccaacagcctggtcctgatcaacaacgtc
accgatgtacgggagcacctcgcccgtctcgtcccgcccgggttcgtcaccgcgaccagg
ctgcgcaggctgcccgacctgatgcgctacctggtggcggaggaccgccggctccagcag
atgccgaccaacgtccagcgcgacacctcgcgcatggagaaggtccacgagatgcaggac
gagtacgcctggctgctcgaacagctgccgcggggcaggcccgttccgcaggaggtcctg
gacatccgctggatgatcgaggagctgcgcgtcagctatttcgcacacgcgctgggcacc
gcgttccccgtctccgacaagcggatcgtgaaggcgatcgacgccgccgccccgtaa
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