Seriola lalandi dorsalis (Yellowtail amberjack): 111644521
Help
Entry
111644521 CDS
T06058
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111644521 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slal03021
]
111644521 (smarcc1)
03036 Chromosome and associated proteins [BR:
slal03036
]
111644521 (smarcc1)
Transcription machinery [BR:
slal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111644521 (smarcc1)
Chromosome and associated proteins [BR:
slal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111644521 (smarcc1)
PBAF complex
111644521 (smarcc1)
GBAF(ncBAF) complex
111644521 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
111644521
NCBI-ProteinID:
XP_023249187
Ensembl:
ENSSLDG00000013957
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MATAATTAGGTGSGGPATGQVGGGTAVGRKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSSDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDTW
VSVSEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNASSKKDSENTPVKGGNVADLDDMENDSVLSGGKD
DEEQGKAEINRLMDASEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSE
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQQMPNFAGKDKDKAIDLQNFGLR
TDLYKKTLKGKPVTSTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLENNEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMDTD
TDSQQADKAELKDEAEKPSESAEKSDKTEATEKVKKEGAETSEREEETEEAAEAKTSPAD
KEKEEAMETSSSEQEKDKEEKAATEEGEDKRKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAAAAAQAQGQGQAPGSGPHSGPPQPGMHPGGPPP
HHGGPTPHHGAPPPHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPSQPIPGRMMP
GPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPAPAQPEAMPVAPVGPAAPPSGRVADN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggccag
gtcggtggcggaaccgcagtgggacgtaaaaaggacggtggcccatccacgaaattctgg
gaaagttcagagacgatatcccaactggagacggtgcggctctggattggaaagcactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggtctggttgtccag
ctgctgcagttccaggaggacgcatttggacgcagggttaacaatcctgctcttaccaag
ctacctgccaaatgtttcctggatttcaaggcaggaggtgctctctgtcatatcttgggg
tcggtctacaagtttaagagtgagcagggctggcgtcgatttgacctacagaatccctcc
cggatggacaggaacgtggaaatgttcttaaatgtagagaagaacttggtccagaataac
tgcttgactcgacccactgtcttcctgtcatcggatatcgagcagaaacaggccagtaag
ctcaaagacatcatcaaaaggcaccagggttccatcactgatgacaagtcaaaggccacc
caccacatttacccttcaccatcccaacaagaggaagaggagtggcttcgtcctgttatg
aggaaagataagcaagtgctggtgcactggggtctctacccagacagctatgatacctgg
gtatcagtgagcgaggtggacggtgatgtggaggatcctccaagcactgacagaccctgg
aaggtccacgccaagtgggttttagacacagatgccttcaatgagtggatgaatgaagaa
gactacgaggtagacgagaacaagaagcctgtcagcttccgccagaggatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactccgctggaaag
aagaggaggcgctcgccctcgccgcccagcactcccgtcgagtcccgcaagaagggagga
aagaaggggaaccccgggcctcactggaagcgacggggccacagaggcgaagaggaggac
acagaggaggacatgaccaaggatatggacgactcatcagctggtgccagcatggaggag
ggaagcatgtccaagaacgcaagttcaaagaaagacagtgaaaatactccagtgaaagga
gggaatgtggccgacttggatgacatggagaatgactctgtgctgtcgggtggaaaggac
gatgaggagcaaggcaaagctgaaatcaaccggctgatggacgctagtgaggacaacgtg
accgagcagactcaccacatcatcatccccagctacgccgcctggttcgactacaactgc
atccatgagatagagagaagagccttgcctgagttcttcaatggaaagaacaagtccaaa
actccagagatatacctggcctaccgcaacttcatgatcgacacgtaccggctaaaccct
caggagtatctcacctccacctcctgccgcaggaacctgactggggatgtctgcgccatc
atgagggttcatgcgttcttggagcagtggggtctggtgaactaccaggtcgactccgag
agtcgcccgctgcccatgggccccccacctacaccccacttcacggtgctggctgacaca
ccttccggcctcatgcccttgaaccaccgacccccgccgattcctcctccacagcaaatg
cccaactttgcaggcaaagacaaagacaaagccatcgacctgcaaaactttggccttcgc
accgacctctacaagaaaaccctaaagggtaaaccagtcacctccaccagggaatggacc
gagcaggagactctactgctgctagaggccctggagatgtacaaagacgactggaacaaa
gtgtcggagcatgtcggttcacgcacccaggacgagtgtatcctgcacttcctgcggctg
cccatcgaggatccgtacctggagaacaatgaggcctctctgggccctctggcctaccag
cccatacccttcagccagtctggaaaccccgtcatgagcacagtagccttcctggcctct
gtggtcgaccccagggtggcgtctgctgctgccaaggcagctctagaggagttttcccgt
gtgcgtgaggaggtgccggctgagctggtggaggctcatgtgaagaaggtgcaggaggcg
gctcggagcacagggaaggtggaccccgccttcggcctggagagcagtggcatcgctggc
accgcccccgaggagccggaaaagactgaaaccacagagccagaaaagatggacactgac
acagactcccagcaggccgataaggcggagttgaaggacgaggcagagaagcccagtgag
tctgcagaaaagagtgacaagacggaggcaacagaaaaggtgaagaaggagggagcggag
acatcggagcgtgaggaggagacggaggaagcagcggaggcaaagacgtctccagcagac
aaggagaaggaggaagcgatggagacatcatcctcagagcaggagaaggataaggaggag
aaggcagctacagaggagggcgaggacaagaggaagaagctggagcatgacattggagag
ggaaatatcgccacggcagccgcagctgctctggcatctgctgccacaaaagccaagcat
ctggcagccgtggaggagaggaagatcaagtcgctggtcgctctgctggtggagacccag
atgaagaagctggagatcaagctgaggcacttcgaggagctcgaaaccatcatggaccga
gagaaagaggctttggagcttcagcggcagcagctgctcaccgagcgtcaggcgttccac
atggagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcagcaggctgct
gccgctgccgccgccgccgctgctgcggctgcccaggcccaaggacagggacaggcccct
ggatctggaccccactctgggccccctcaaccaggcatgcacccaggaggacccccaccc
caccacggaggaccaaccccacaccacggagcacctcctccccaccacggagggccacca
cccggcgctgccatgcaccccggctaccccccaatgggtcaccaccccatggcgcctcac
cacccaggacagacaggaccgatgggacccagccagccgattcctggacgtatgatgccc
ggcccgccctctgccggcccccctcctggcggcatgcctcccatgatgcccccacgccac
cccggagctcccaacggcatgtaccctggtccagcacctgcacagcctgaggccatgcct
gtagctcctgtgggtcctgcagcgcccccgagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
