Seriola lalandi dorsalis (Yellowtail amberjack): 111645609
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Entry
111645609 CDS
T06058
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03013
Nucleocytoplasmic transport
slal03015
mRNA surveillance pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111645609
09122 Translation
03013 Nucleocytoplasmic transport
111645609
03015 mRNA surveillance pathway
111645609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111645609
03041 Spliceosome [BR:
slal03041
]
111645609
Enzymes [BR:
slal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111645609
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111645609
Spliceosome [BR:
slal03041
]
Complex C
Other components
EJC/TREX
111645609
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111645609
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
111645609
NCBI-ProteinID:
XP_023250631
Ensembl:
ENSSLDG00000015763
UniProt:
A0A3B4YAK0
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAAGVGDVGGGGDMSIRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDCPHVVVGTPGRI
LALTRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVDISELPD
EIDISSYIEPAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggacaacgagctgttggactatgaggaggacgaggtggaggct
gcaggggttggggatgttggaggtggaggtgacatgtcgataaggaaggagggagtgaag
ggctcctatgtgtccattcactcctctggattcagagacttcctgctgaaacctgagctg
ctcagagccatagtggactgtgggtttgagcatccatctgaggttcagcatgaatgcatc
cctcaggcgatccttggtatggatgtgctctgtcaggccaagtctgggatggggaagact
gcagtgtttgttctggccaccctgcagcagctggagcccgtcactggacaggtgtcggtc
ctggtgatgtgccataccagagagctggcctttcaaatcagcaaggagtatgagagattt
tcaaagtacatgccaactgtcaaggtggcagtgttctttggagggctgtctataaagaag
gatgaagaggtgctaaagaaggactgtcctcatgttgtggtggggacaccaggcaggatc
ctggcactgacacgcaacaagacactcaacctgcgtcacatcaaacatttcatcctggat
gagtgtgacaagatgctcgagcagcttgacatgcgcagagacgtccaggagattttccgt
atgactccccatgagaagcaggtcatgatgttcagcgccactctgagcaaagagatccgt
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtggacgatgagaccaag
ctgactctgcacgggctgcagcagtactacgtcaagctgaaggacaatgagaaaaacaga
aagctctttgacctccttgatgtactagagttcaatcaggtggtgatctttgtcaagtct
gtccagcggtgtgtagctctggctcagcttctggtggagcagaacttcccagcgattgcc
atccatcgagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaggacttc
cagaggagaatcctggtggccaccaacctgtttggacgagggatggacatcgagagagtc
aatattgcctttaactacgacatgccagaggactccgacacttacctacacagggtggcc
cgggcaggcaggttcggaacaaagggcctcgccatcacgttcgtgtcggacgaaggtgac
gcccgcacgctcaatgatgtccaggaccgcttcgaggtcgacatcagcgagctgccggac
gagattgacatctcctcttacattgaaccggcgcgatag
DBGET
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