Seriola lalandi dorsalis (Yellowtail amberjack): 111646808
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Entry
111646808 CDS
T06058
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04140
Autophagy - animal
slal04148
Efferocytosis
slal05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111646808 (vps39)
04148 Efferocytosis
111646808 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
111646808 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slal04131
]
111646808 (vps39)
Membrane trafficking [BR:
slal04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
111646808 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
111646808
NCBI-ProteinID:
XP_023252125
Ensembl:
ENSSLDG00000011531
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDPGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATIFACDLQQAVSGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEDGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVEYLQRLGVENLG
IIFEFSPWVLKICPDDGLKIFTEDLTEVETLPRDKVLNFLKEGFTELAIPYLEHIIYVWD
DKGPEFHNVLIQLYLERVQILMKEYLSSLPEGVPAVAAGKEKGKLGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHGHYNSSVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSGPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEERAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRTVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctattttggaaaagcttccccttcagattgactgt
ctcgcggcctgggaggactggctgcttgttggaacaaaaccagggcatctccttctctac
cgaataaagaaagatccaggaaccaaccggtttgaggtcacactggaaaaatccaacaag
aacttctcaaagaagattcagcagctttacgttgtctcacagtacaaaatccttgtcagt
ctactggagaacaacatccacgtccacgacctcctgaccttccagcagatcactgtggtg
tccaaagccaaaggagccacgatcttcgcatgtgacctgcagcaagccgtctcaggagag
gaaaggctgagaatgtgtgtcgcagtaaaaaagaaactccagctgtattactggaaggat
agagagttccacgagctgcagggcgacttcggtgcaccagatattccaaagtccatggcc
tggtgcgaaaactccatatgtgttggtttcaaacgagactattaccttattcggatggat
ggccgtggctccatcaaggagctcttccccaccgggaaacagttagagcctctggtcgcc
ccactggctgatgggaaggtggctgtcgggcaggatgacctaactgtggtgctaaatgaa
gatggcgtttgcacccagaagtgtgccctgaactggacagacatccccatagcgatggag
caccagcctccgtacatcatcgctgttctccctcggtacgtggagatccggacctttgag
ccgaggctgctggtgcagagtgtggagctgcagagacctcgcttcatcacctcagcaggg
cagaatattgtgtacgttgccagcaaccactttgtgtggcgcctggtgcccgtttcaata
gccacccaaatccggcagcttcttcaggacaagcagtttgagctggctctccagctggcg
aagatgaaggatgattcagacggagacaagaagcaacagatacatcacatccagaatctc
tacgccttcaatctgttttgccagaagagattcgacgactccatgcaggtgtttgctaaa
ctcggcacagatcccacccacgtgattggactgtacccggacctgctcccgtcagactac
cgcaaacagctgcactatcccaaccccctgccgacgctgtccggggcagagctggagaag
gctcacctcgctctgatcgattacctcacccagaaacgcagccacctggtgaaacagctg
aacgactctgacccctccacaacgtctccactcatggagggcacaccgaccattaagagc
cgcaaaaaactcctgcagatcattgataccaccctgctgaaatgttacctgcataccaat
gtggccctggtgtccccccttcttcgtctggagaacaaccactgccacatcgaggagagc
gagtacgtcctcaagaaggctcacaagtacagcgagctcattattctttacgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctggaccagtccaccaaggccaactctccg
ctgaagggccacgagcgaacagtggagtacctccagagactgggtgtggagaacctgggc
ataatctttgagttttctccctgggtgctgaagatctgtcccgacgacggtctgaagatt
ttcacggaggacctgacagaggtggagactttgccccgagacaaggtgctgaatttcctg
aaggagggtttcacggagctcgccatcccgtatttggagcacatcatctacgtgtgggac
gacaagggtccggagtttcacaatgtgctgatccagctctacctggagagggttcagatc
ctcatgaaagagtacctcagctcactgccagaaggggttccagctgttgccgcaggaaag
gagaagggcaaactgggagagttcaggaacaagctgctgtcgttcctggatatttctacc
agctacgaaccggccagactcatcagtgactttccctttgatggcctgctggaggaacgg
gctctgctcctgggacggatgggtaaacacgagcaggcgctcttcatctatgtgcacgtc
ctgaaagacacccgcatggctgaggaatactgccacgggcactacaacagctcggttgaa
ggaaataaagacgtttatctgtctctgctgcggatgtacctgtcaccccccgacgtccac
tgcctggggcccatcaagatggagctgtcggggcctcaggccaacctccaggcagccctg
caggtcctggagcttcaccacagcaagctcaacaccaccaaggccatcaatctgctgccg
gcgaatactcagatccgagagatccgggttttcctggagagcgtcctggaggagagggct
cagaggaaacgctgcaaccaggtgctgaagagtctgctgcaggccgagttcctcagggtg
caggaggagcgaatcttccaccagcaggtcaaatgtgtcatcacagaggaaaagacctgc
agagtttgcaagaagaaaataggaaacagcgcgttcgccaggtatcccaacggcgtggtg
gttcattacttctgctgcaaagaccgcaccgtgtgtcccactgagcagtaa
DBGET
integrated database retrieval system
