KEGG   Seriola lalandi dorsalis (Yellowtail amberjack): 111647391
Entry
111647391         CDS       T06058                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03013  Nucleocytoplasmic transport
slal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:slal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111647391 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    111647391 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slal03019]
    111647391 (thoc6)
   03041 Spliceosome [BR:slal03041]
    111647391 (thoc6)
Messenger RNA biogenesis [BR:slal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111647391 (thoc6)
Spliceosome [BR:slal03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111647391 (thoc6)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_TEP1_2nd ANAPC4_WD40 WDR55 Beta-prop_EML_2 EIF3I Beta-prop_SCAP WD40_Gbeta NBCH_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_like WDR90_beta-prop_4th WDR54 Beta-prop_NUP159_NUP214 Beta-prop_WDR90_POC16_2nd MIOS_WD40
Other DBs
NCBI-GeneID: 111647391
NCBI-ProteinID: XP_023252755
LinkDB
Position
Unknown
AA seq 243 aa
MYPLICDFLSPQNVKPLWTKRPNYKSSLEIPEINSMIINPRDNSLVVGGGDNNIHILDLE
HGVFKSVLQGHSDYVHCVSVREREAEILSGGEDGAVRIWDSRTGQTVHCIEVYKYEECAR
PQFGKWISCLTTDSDWMLCGGGPSLSLWHLRSLSPTSTFPLSGCQRQAAFYQDMILAVGE
GQSVSHCLLGGEVKAQIPCSSQSLNTLQLNTNSTEHRVLTVGGSSDHIDVFTNLSYRAFS
LSF
NT seq 732 nt   +upstreamnt  +downstreamnt
atgtatcctttgatctgtgacttcctgtctcctcagaatgtcaaacctctgtggacaaaa
agacccaactacaagtccagtctggagatcccagagatcaactccatgatcatcaacccc
agagacaacagtctggtcgtcggtggaggagacaacaacatccacatcctggacctggaa
catggcgtcttcaagtccgtcctgcagggacactcggactacgtccactgtgtgagtgtg
agggagagggaggccgagatcctgtcggggggggaggacggagccgtgaggatctgggac
agcaggacaggacagacggtccactgcatcgaggtctacaagtatgaggaatgtgcacgg
cctcagttcggtaaatggatcagctgtttgacgacagactctgactggatgctgtgtggt
ggaggtccgtctctgtctctgtggcacctgcgctctctgtctcccacctccaccttcccg
ctgagcggctgccagcgacaggccgccttctaccaggacatgatcctggctgtgggcgag
ggtcagtctgtgtctcactgtctgctggggggagaggtcaaagctcagatcccctgctcc
tcacagagcctgaacaccctgcagctcaacaccaacagcaccgagcaccgggtgctgacg
gtcggaggcagcagcgatcacatcgacgtcttcaccaacctgtcgtacagagcgttttca
ctcagcttctga

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