Seriola lalandi dorsalis (Yellowtail amberjack): 111648167
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Entry
111648167 CDS
T06058
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111648167 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111648167 (col11a1)
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111648167 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
111648167
NCBI-ProteinID:
XP_023253733
Ensembl:
ENSSLDG00000008106
LinkDB
All DBs
Position
Unknown
AA seq
1811 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTVTAFITLILVLQADNVRAEEPVDVLKVLEFQNYPEGVTKT
SGFCTNRRASKPDSAYRVAKQVQISAPTTQLFPGGVFPEDFSILTTVRPKSGLQSFLLSI
YNEQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFPTLNLADGKWHRVAISVEKKTVTV
IVDCKKKIIKPLPRSDHASIDTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCDTPHGDSLQAQEPEEEYTTDDLDYSQFYDYSEGATDIIPTDEYSEPQLNNVEGDY
NTDIDYGTVDGTQTQSPFATSGPYEAVEEDVVGANGYEAAPIAPEPTAVPEMVDNLDTGA
EAYDFKEYDLKEYDLGEVDNRLYDYGAYDEYGTAPPKPTAAYDDEVGPGVAAETDVSEST
VAGAGGAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPSGDPGDRGPP
GRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPM
GLTGRSGPVGLPGAPGLKGESGDPGPQGPRGIQGPSGQSGKAGKRGRAGADGARGMPGEP
GSKGDRGFDGLPGLPGEKGHRGEIGPMGPPGAPGEDGQRGEDGEIGPRGLAGESGPRGLL
GPRGPPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGTPGTQGLPGPQGPIGPPGEK
GPQGRSGLPGLPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGVRGLK
GSKGEKGEDGFPGFKGDMGIKGDRGELGMLGSRGEDGPEGPKGRAGPNGEPGPLGPAGEK
GKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGARGAR
GPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET
GFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ
GSSGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGPAGPIGLS
GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEP
GQKGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPP
GPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEK
GEQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFP
GDPGPPGEPGVAGTDGEAGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ
GEKGAKGEAGSEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPM
GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDGGISGSA
GPLGPPGPPGLPGPQGPKGSKGSSGPAGAKGDTGSVGPPGPPGPPGEVIQPLPIQSPKKT
KRSADMQSDAAGTIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHP
EFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEF
KRGKILSYVDADGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDAASDSYDKALRFL
GANDEEMSYDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKF
GFEVGPVCFLG
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
gtaaccgcattcatcactttaatcctggttctacaggctgataatgtcagagcagaagaa
ccagtggatgtcctaaaagtattagaatttcaaaattaccccgaaggagtgacgaaaaca
tcaggattttgcacaaaccgaagagcatcaaagccggactcagcttacagagttgccaag
caggtccagatcagtgcccccaccacgcagttattccctggaggtgtttttcctgaggac
ttctccatcctgaccacagtgcgccccaagtccggcctccagtccttcttgctgtcaatt
tacaacgagcagggggtccagcagctgggcgtggaagtgggacgctcacctgtcttcctg
tatgaggatcagactggtaaaccagccccagaggactaccccctgttccctactctcaac
cttgctgacggaaagtggcaccgtgtggctatcagtgtggagaagaagacagtcactgtc
attgtagactgtaagaagaagatcatcaagcctctccccaggagtgaccatgcttccatc
gacaccaatggcattactgtgttcggcaccaggatcctggatgaggaggttttccagggt
gacatccaacaacttctgatcgtggctgatcccaaagcggcatatgactactgtgaacat
tacagcccagactgtgacactccccacggtgattccctgcaggcccaggagccagaggaa
gagtacactactgatgatttagattactctcagttctatgattactctgagggagcaaca
gacatcattcccaccgatgagtattctgaaccacagctaaacaatgtagaaggagattac
aatacagacattgactacggaactgtagatggtactcaaactcagtccccctttgccacg
agtggaccctatgaggctgtggaggaggatgttgtcggtgctaatggctacgaggccgct
cccattgctccggagcccaccgctgtcccagaaatggtggacaacttggacactggtgcg
gaagcatatgactttaaggaatatgacctaaaggagtatgacttgggggaggttgacaac
aggttgtatgattacggggcatatgatgagtatggcactgccccccccaaacccacggca
gcctacgatgatgaggtggggcctggggttgctgctgaaaccgacgtttctgagagcacc
gttgctggtgctggaggagccttcggccagaagggagaaaagggcgagccggctgtgatt
gaacctggcatgctgattgaaggaccgccaggacctcctggcccagctggccttccaggt
ccctcaggcctacaaggaccccccgggccttctggagatcctggtgacaggggtcctcct
ggtcgtgctggtctgcctggtgctgatggtttgccagggccccctggtactatgctgatg
ctgccattccgttttggtggggatggtgagaagggtccagtggtgtcggcacaagaagcc
caagcccaggccatcctctcccaggccagactggctatgaggggaccccccgggccgatg
ggtctgacaggacgatcagggccagtgggtctacccggtgctcctggactgaaaggtgaa
agtggagaccctggacctcagggtccccgtggcatccaggggccttcaggacaatctggc
aaagctggcaagaggggccgtgctggagcagacggtgcccggggaatgcccggagagcca
ggctccaagggtgaccgaggctttgatggactccccggactgcctggtgaaaagggacac
aggggggagataggaccaatgggacccccaggtgcccctggagaggatggacagagaggc
gaggatggagagattgggcccagaggattagctggcgagagtggtcctagaggtttgctg
ggacctcgtggtcctccaggaccccctggatctcctggcgttgctggagttgacgggcct
ccaggtcccaaaggaaacatgggaccacaaggagaaccaggcccacctgggcagcaagga
accccagggacacagggtcttcctggtcctcaaggccccattggaccacctggagaaaaa
ggacctcagggcaggtcggggttgcctggattacctggagctgatgggcctcctggtcat
cctggtaaggaggggccacccggagagaaaggaggacaaggtccaccaggtccacagggt
cccattggttatcctggccctcgtggtgtgaagggtgctgatggtgtccgtggtctcaag
gggtcaaagggagagaagggcgaggacggtttcccaggtttcaagggagacatgggaatc
aaaggagaccggggtgagcttggcatgcttgggtcccgcggagaggacggtcctgagggt
cctaaaggccgagctggacccaacggagaaccaggtccccttggtccagctggggaaaag
ggtaaactcggtgtcccaggattgccaggttatccaggaagacaaggaccaaagggctcc
agtggtttccctgggttcccaggagccaacggcgagaaaggagccaggggtgttgcaggt
aaacctggtccaagagggcaaagaggtccaacgggtcctcgtggtgctcgaggagccaga
ggtccaacaggaaaacctggtcccaagggcacagcaggcaacgacggccctccaggccca
cctggtgagagaggacctcaagggcctcagggacctgtgggcttccctggaccaaagggc
ccccctggaccacctggaaaggatgggctgcccggacaccctggccagcgcggagaaacg
ggtttccaaggaaaaaccggcccaccaggtccaggaggtgttgtcgggccccagggaccc
actggagagactggtcccgttggtgagagaggacaccccggacccccaggtccacctgga
gaacagggtcttccaggtgctgctggcaaggagggagcgaagggagaccctggaccacag
ggatcctccggtaaagacggtccccctggccttcgtggcttccctggagagagaggttta
cctggtgccacgggcccagcaggtctgaagggaggagaggggccccaaggtccacctggt
cctgttggttctcctggtgagagaggccctgctggtccagctggtccaattggcctgtcc
ggtagacctggccctcagggtcccccaggtcccgctggagagaagggagcacctggtgag
aaaggacctcaaggtccagctggtcgtgatggtgtccagggtcctgttggcctgcctggg
cctgctggaccccagggtccacccggagaggatggtgacaagggagaggttggagagccc
ggtcagaaaggaagcaaagctgacaagggagaacagggtcctcccggcccagctggtctc
caaggtcccataggtgccccaggtcctgctggagctgatggagagcctggtcccagaggt
cagcagggtatgtttggacagaagggagatgaaggttccagaggtttccctggaccccct
ggtcccattggcctgcaggggcttcccggacctcctggtgagaaaggagagaacggtgat
gttggccctatgggccctcctggtccccctggtcccagaggtcctcagggtcctagtgga
gctgatggtccacaaggtcctccgggcggcgtgggccccatgggatctgtgggtgagaag
ggtgaacaaggtgaggccggaaacccaggaccccctggagagcctggaactgggggaccc
aaaggtgagagaggagagaaaggagaggctggccccccaggagctgctggacccgctggt
gccaaaggaccccctggagatgacggtccaaagggcaatcctggtcctgtcggattccct
ggagaccctggacctcctggagagccaggtgttgctggcactgatggggaagcaggagag
aagggagaggatggggaggccggtcagcctggacctccaggtccatcaggagaagctggc
ccacctggaccacctggcaagagaggacctccgggggctgcaggtgcagagggcaggcaa
ggagagaagggcgctaagggtgaggctggttcagagggtccagcaggtaaaacaggaccg
gttgggccccagggaccttcaggaaaacccggtccagaaggtctacgtggaatccccggc
cccgttggtgaacaaggactgccaggctccccaggacaagacggtccacctggtcctatg
ggtcctccgggtcttcctggtctgaaaggtgaccctggatctaagggtgaaaagggtcac
ccaggtttgatcggtctgattggaccccctggtgagcaaggagagaagggagaccgaggt
ttgcctggaccccagggttctcctggtggcaagggcgatggtggtatcagcggatctgcc
ggtcctctcggtcccccaggtccccccggtctgcctggtcctcaaggtcccaagggatcc
aagggttcaagtggtcctgctggtgccaaaggagacactggttcagttggtcctcctggt
cctcctggcccaccaggtgaggtgattcagcccctgcccatccagtcacccaagaaaacc
aaacgctctgctgacatgcagtcagatgcggccggtaccatcatggactatggcgagggc
atggaggacatcttcggctcactcaacaacctcaaacaggacatcgaacgcatgaagtat
cccatgggcacacagaacaacccggccagaacgtgcaaagatctgcagctgtgccaccca
gagttccctgatggcgaatactggattgatccaaaccaaggttgctcgggggattccttc
aaagtctactgtaacttcaccgccgggggtgaaacctgcatctatccagataagaagtcc
aacggagtcagaatatcttcatggcccaaagaagttcctgggtcatggttcagtgaattt
aaacgtggtaaaatactttcctatgttgacgcagatggaaactcaataaacatggtacag
atgaccttcctcagactactgacagcctcggccaggcaaaacttcacctacagctgccac
cagtctgtggcgtggcacgatgccgccagcgacagctacgacaaggcgctgcgcttcctg
ggcgccaatgatgaggagatgtcctatgacaataacccttacatcaaggccctctcagac
ggatgcgcgacgaggaagggctatggaaagactgtgatggagattaatactcccaaaatc
gatcaggttccaatcatcgatgtcatgttgactgactttggggaccctaaccagaagttt
gggtttgaagttgggcccgtctgcttccttggctaa
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integrated database retrieval system
