Seriola lalandi dorsalis (Yellowtail amberjack): 111649911
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Entry
111649911 CDS
T06058
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111649911 (col25a1)
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111649911 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111649911
NCBI-ProteinID:
XP_023255378
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MEIAEARGASKCVEKMEKVAPQKRQYCRTTVLNIISSLCSVASIAFCILLSINTADIKNR
VVDLESGNGEHPFIRAPGYSLDDFNSLIQQRVDELLSQRSYENFVKIRTARQTSPECNCP
PGPPGKRGRRGRNGEPGPPGPPGLKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLI
KGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGDTGPMGPEGPQGL
KGSLGPPGVPGVDGLKGDVGIPGFDGIPGVKGEMGERGEKGDMGEDGPKGDMGEKGDAGS
SAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDH
GPPGKGERGELGPIGPKGSQGEAGTPGPKGSKGETGDKGELGSAGPKGPPGQKGDQGATE
IIDYNGNIQEALQKITTITVTGPPGPPGPIGPNGIKGDRGMPGLPGLDGERGYKGSKGDM
GMPGASGEKGATGLPGLPGVNGVKGEKGDLGLPGPQGPSIIGPPGPSGPHGPPGPMGPHG
FPGPKGEPGLHGVKGMRGELGHKGDRGPLGLPGASGLDGKPGIRGMDGPSGPAGPAGPKG
DIGERGAPGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGFRGFKGEKGEPG
QPGLDGLDAPCQLVQYFSFSCSSYPCMPLTFSHY
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatccaagtgcgtggaaaaaatggagaaagtggcg
cctcagaagcgacaatactgtcgcacaacagtgctgaacataatctcgtctttatgttca
gtggcgtccatcgccttttgcattcttctgagcattaacacagctgacattaagaaccgg
gttgtggatttggagagtgggaatggcgagcacccgttcatccgtgcccctggctactcc
ctggatgattttaattcattgatccaacaaagagtggatgagctgctctcgcagcgctcc
tatgaaaattttgtcaagattcggactgccagacaaacgtcacctgaatgcaactgccct
ccaggacctccgggaaagcgaggaagaagaggccgcaatggagaacctggacctcctggt
cctccaggtctgaagggtgaaaagggggatcaaggcgaccagggaccacggatggtcttc
cctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctcatt
aagggagatcaggggcaagcaggaccacctgggcctccagggccaccgggtccccctggg
ccgagagggcctccaggggacacaggcaaagatgggcccagaggtgtgcctggtctccca
ggtgatccagggcagcctggagacacaggacccatggggcctgaggggccacaagggctg
aagggttcactcgggcctcctggcgtcccaggtgttgacggactgaagggggatgttggc
atcccaggattcgacggtatccccggagtcaagggtgaaatgggagagcgaggtgaaaag
ggtgatatgggtgaagacggaccgaaaggtgatatgggggagaagggagatgcgggctcc
tctgcagcaggcatcaagggcgaacctggagagcctggacgtagtggacaaaagggagag
ccaggacttccagggctgcctggactcccggggataaagggtgagcctggattcctcggt
ccccagggagagccaggacttcccggactcccaggaactaagggtgagagaggcgaccac
gggccaccaggaaagggtgagcgcggagaacttggacccattggaccaaagggttcacaa
ggagaggctggtacacctggtcctaaagggtcaaagggagagactggagataaaggagag
ttgggatccgctggcccgaagggcccccctgggcagaaaggagaccaaggagccactgaa
atcatcgactacaatggaaacattcaggaggctctacagaagattaccactattacagta
acgggtcctcctgggcctcctgggccaataggaccaaacggtataaagggggatcgtggt
atgcctggtctccctggactcgatggagaaagaggctacaaaggttcaaaaggagacatg
ggaatgcctggcgcttcaggggagaaaggagcaactggtttacctggcctacccggtgtc
aatggggtaaaaggagaaaaaggagatctaggtctacctggtcctcagggtccttcaatt
atcggccctccagggccttcagggccccatggaccaccaggacccatgggaccccatggt
ttccctggaccaaagggtgaacctggattgcatggtgtgaagggtatgcgaggggaactg
ggacacaaaggggatcgtggacctctgggtctccctggagcctccggcttggacggcaag
cccggaattaggggcatggatgggccttcaggtccagctggtcctgctgggccaaagggt
gacataggtgagagaggagcaccaggcgaaccaggaccaaggggaccttatggactacct
ggagctgccggaacaccaggcttggatgggttgccaggcttaaggggagagaaaggcgac
gttggggaaagaggagaaaagggtttccggggatttaagggtgaaaagggggaaccaggg
cagccaggtctggacgggctggatgccccatgccaattggtacagtatttctctttttcc
tgctcctcttacccatgcatgcctctcaccttcagtcattactga
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