Seriola lalandi dorsalis (Yellowtail amberjack): 111651243
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Entry
111651243 CDS
T06058
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04518
Integrin signaling
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111651243
04518 Integrin signaling
111651243
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111651243
09142 Cell motility
04820 Cytoskeleton in muscle cells
111651243
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111651243
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111651243
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111651243
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111651243
Hyaluronan
Extracellular matrix or blood plasma proteins
111651243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
111651243
NCBI-ProteinID:
XP_023256981
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MEMISGFIFLCMLQAAIPQRLTPRGPRPIPGQGDIGPPTPPPILPEPTPEPGSCETGIID
CPIKLFFTIDTSESIALQESPISVLVDNIIEFTKIFVQRLADEEYRGQIQISWSIGGLYF
SQKQVVFSQFTTKENFIRNLGGIVYLGKGTYIDCAVKNMTHHLTQHYTGKRAALFSVVIT
DGHVTGNPCGGMKVMAERAREKGIHIFSVASSRRVDELAMSEIASSPQGVYRDDYIAVDI
VDGRPKIKTESIDRIIQAMKYQAYLQCYKPKCFESPGMPGPKGFPGQKGAKGNTGQPGPK
GYKGRQGDPGIEGPIGQPGPKGEVGFKGDKGEIGTSGAKGAEGQPGRNGTDGQKGKIGRI
GAPGCKGDPGDNGPNGYIGEVGDTGPPGDKGVKGNDGHPGKSGRTGPRGAQGPKGEKGNP
GNPGPAGKKGTPGSIGLPGPKGVEGSRGDSGKKGAPGLDGPKGEKGERGPQGGRGRTGED
GFKGAKGDQGLPGPRGQPGEAGATGANGTKGNPGDLGPRGDSGPPGPKGDKGRQGFSYPG
PRGPTGDKGGPGRRGFGGGRGDCGAKGDPGDKGPPGKPGEPGEPGGPGERGPRGKPGTDG
GPGPAGDPGLSDCDVMTYIRETCGCCDCEKRCGPLDIVFVIDSSESVGQTNFTLEKNFVI
NTINRLGNMASDPASPTGTRVGVVQFSHTFEAIHLSDSSINSMSAFKTAVKNLNWIAGGT
FTPSALKFAYDNVIRNSKRAQAKVSVVVVTDGRYDPNDNETLLPYLCGRSNVVVTAIGVG
DMFQKQHDDNIVGSIACGRRERVKKMKNFVDLVAEDFIGSIETVLCPDPVIVCPDLPCIS
EPDVAPCVERPVDLVFLLDGSERLGTVNFQQVREFLRKVAERLGLARSKTDGMRARLALL
EFGKENENHLAFPLTHDPAIIEDGIARLPYLDSSSSVGPAIFHTINNILGRQNVRNTRPN
AELSFVFITDGITGNSNLDEAVSAMRSAQVVSTVIATGSDVDQEVLTKLAMGDQNAIFKG
KFMSDLTRSSLFDRFIQWVC
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggagatgatttcagggttcatttttctgtgtatgctccaagctgcaatccctcaacgt
ctgacccctcgtgggccaaggccaatacctgggcaaggtgacattggaccaccaactcca
cctccaatcctacctgagcccacaccagaacctggaagttgtgagactgggataatcgat
tgtcccatcaagctgtttttcaccatcgacacctcagagtccatcgccttacaggagtcc
ccgatcagtgtcctggtggacaacatcatagagttcaccaagatctttgtccagaggctg
gccgatgaggagtacagaggccagatccagatcagctggtctataggaggcctgtatttc
tcccagaagcaggttgtcttcagccagtttacgaccaaagagaacttcatcaggaatctc
ggtgggatcgtatacctgggcaaaggcacctatatcgactgtgctgtgaaaaacatgacc
caccatctgacccagcactacacagggaagagggctgccctcttctctgtcgtcattact
gatggccatgtgacaggaaacccatgtggagggatgaaggtgatggcagagagggcccgg
gagaaagggatccatattttctcagtggcatcgtccagacgagtcgatgaattagcgatg
agcgagatagccagctccccccagggagtttaccgtgacgactacatagctgtggatatt
gttgacgggcgaccaaaaataaagactgaatccatcgatcgtataattcaggccatgaaa
tatcaagcgtatttacagtgttacaaaccaaaatgcttcgagtctcctgggatgcctgga
ccaaaagggtttccaggtcagaaaggtgcaaaaggaaacacaggtcaacctgggccaaaa
ggttacaaaggtagacagggtgatcctggcattgaaggtccaatcggacaacctggtcca
aagggagaggttggtttcaaaggtgacaagggtgaaatcggaacaagtggagccaagggt
gcggaaggacaacctggcaggaatggaaccgatggccaaaagggtaaaattggccgaatt
ggagctcctggttgcaaaggtgatccaggtgataacggaccaaatggttacattggagaa
gttggtgacactggaccacctggtgacaaaggagtaaagggtaatgatggccaccctggg
aagtctgggcgcactggtcctcggggtgcacaaggaccaaagggtgaaaaaggaaaccct
ggaaatccagggccagcgggaaaaaagggtactccggggtctataggcttaccaggacct
aaaggcgtagagggaagtagaggagactctggtaaaaagggagcaccaggacttgatggg
ccaaaaggagagaagggagaacgtgggccacaaggaggcagaggtcggaccggggaagac
ggattcaaaggcgctaagggagaccaaggactaccaggaccgaggggtcagccaggagaa
gcaggggcaacaggagcaaatggcaccaagggaaatccaggagatttgggaccaagggga
gattctggaccccctggaccaaagggagacaaaggaagacaaggattcagctatcctggg
cctagaggacccactggagacaaaggtggtccaggcaggagaggattcggggggggcaga
ggtgactgtggtgccaaaggagatcctggagacaaaggacctccaggaaaacctggggaa
ccaggtgagccaggtgggccaggagaaagaggacccagaggaaaacctggaactgatggt
ggcccaggaccagcgggtgaccctgggcttagtgactgtgatgttatgacttacatcagg
gagacgtgtggttgttgtgactgtgagaagcgttgtggacctctggacattgtatttgta
attgatagctctgagagtgttgggcaaacaaacttcaccctggaaaagaactttgttatc
aacaccatcaacaggctgggcaatatggccagcgaccctgcgtcaccaaccggcacgaga
gtcggagttgtacagttcagtcacacctttgaggcaattcatctcagtgactcgagcata
aactccatgtctgcctttaaaacggcagtgaagaacctaaattggattgctgggggcacc
ttcacaccatcagctctaaagtttgcttatgataacgtcatcaggaacagcaagagggcc
caagccaaagtatccgtggtggtggtcacagatggccgctatgacccgaacgacaacgag
acactgcttccttacctttgtggtcgcagcaatgttgtggtgactgccattggggtaggt
gatatgtttcaaaagcaacacgatgataatatcgtggggtctatagcatgtggcaggagg
gaacgtgtcaaaaagatgaagaatttcgtggacttggtggctgaggacttcataggatca
atagagactgtgctctgcccggacccagtgattgtgtgccctgatctcccctgtataagt
gaacctgatgtagctccatgtgtcgagcggccggtggatttggtgtttctactagatggc
tcagagcgccttgggacggtgaacttccagcaagtccgtgaatttttgaggaaggtggca
gaaagactgggactggcccggagcaagactgatggtatgcgtgcccgcttagcactccta
gagttcggcaaggagaacgagaaccacttagccttccctctcacacacgaccctgccatc
atcgaagacggcatagcacgcttgccttatctggattcttcctctagcgtggggcctgcc
atctttcacaccatcaacaacatcttgggtagacaaaatgttcgcaacacaagacccaat
gcagagctttcatttgttttcatcacagacggcatcactggcaacagcaacctggacgag
gcagttagtgcgatgcgttctgcacaggttgtctccacggtgatagccactggaagtgac
gttgaccaagaagtcctaacaaagctggccatgggtgaccagaacgcaatctttaaagga
aaatttatgtctgatctaacccggtccagtttatttgaccgtttcatccagtgggtatgt
taa
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