Seriola lalandi dorsalis (Yellowtail amberjack): 111651250
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Entry
111651250 CDS
T06058
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111651250 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slal03041
]
111651250 (prpf40a)
Spliceosome [BR:
slal03041
]
Complex A
U1 snRNP components
U1 related factors
111651250 (prpf40a)
Complex B
111651250 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
111651250
NCBI-ProteinID:
XP_023256988
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTATTT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGSTEAAAPGTTTAPAVQADNTATM
VTVMEAETATAVSEEHLSQAAVHHTPEVKTADAPVTSSESSAATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKAKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRERDGKREKDLDKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccaccgcatttcccaccc
atgggtatgccccctatgggacaacgacctcccagcatgactccaatgcctcctggtata
attccccctggtataatgccaccaatgggcgcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgactccacagctgctgcacctggaacagctactaccaca
aatggctctccacaggaagaacagccaaagaagaagtccctgtggactgaacacaaatca
ctggatgggaagacctattattacaacacagagaccaagcagtccacatgggagaaaccg
gatgaactcaaatctcctgcagaacaaatgctgtctaaatgcccttggaaggaatacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggacctggaagctatgatcaaagcagaggaaaatggatcgacagag
gcagcggcccctggcaccaccacggctcctgcagtgcaagcagataatacagccactatg
gtgaccgtaatggaggcggaaactgcaaccgcagtctcagaggaacacctgtcccaggcg
gccgtgcatcacacacctgaggtcaagactgcagatgcacctgtgacgtcctcagagagc
tcagctgccacagaggccacagccagtgttgaagtaacaaaggaagaacgaccagaactt
cagaagaagacgtacaagtggaacacaaaagaggaggccaagcaggccttcaaagagctg
ctgaaagagaagggtgtgtcttcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatccgcgctacagtgcgcttcccaaactgagtgagaagaagcaggcgtttaatgcc
tacaaagtccagacagagaaggaagaaaaggaggaggcaagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagaacagatgtttggtgagcttgaggtgtggagttgcgttccagagagagac
aggctggagatctatgaagatgtgttgttctacctcgctaagaaagagaaggagcaagct
aagcagctgagaaagaggaactgggaagctctgaagaacattctggacaacatggccaat
gtcacctaccgcaccacctggtctgaggcccagcagtacctgctagacaaccccaccttt
gcagaagatgaggagctgcagaatatggacaaggaggatgccctgatttgttttgaggag
cacatccgggcactggagaaggaggaggaggaagagaaacagaaaactcttctcagggag
aggaggcgacagcgcaagaatagagaggctttccagaaatttctcgatgagctccatgac
cacggccagcttcactccatgtctgcctggatggagatgtacccaaccctgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggatctcttcaaattc
tatgtggaagacttgaaggctcgctaccatgatgaaaaaaggatcatcaaagatattctt
aaagacaaaggcttcctggttgaagttaataccagctttgatgactttggatcagtcatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggccttcaacagt
ttacttgagaaggctgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagccttcaagaacatgctgaaacaggccacacccccgctggagcca
gaggctacatgggagggagtaagagagagattcttaaaagaatctgcctttgaagacgtc
actctggagtcggagaggaagaggattttcaaagacttcatgcatgtcttagagcatgaa
tgccaacaccaccattcaaaggcaaagaagcactcaaagaagtccaagaagcaccacagg
aaacgttcccgctctcgatcaggctcagagtctgaggatgaggaatatcataagaagaaa
aagaggtcacagtccaaatccccctcggaacgctcctccagtggagaatctgagagaagc
tataagaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcatca
ccagattctgacaatgagaagaaaggaagagagcgtgatgggaagcgtgaaaaagacctt
gacaaagataaagagaatgacaagtctcgggggaaatctcgctccgactctaaacagaag
tctcctaaaaggaaagcggccaaagaggagggtggctgggatacatcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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