Seriola lalandi dorsalis (Yellowtail amberjack): 111651291
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Entry
111651291 CDS
T06058
Symbol
parn
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111651291 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111651291 (parn)
Enzymes [BR:
slal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111651291 (parn)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111651291 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
111651291
NCBI-ProteinID:
XP_023257030
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MEVTRKNYKDCLNTVYSAIEDADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAKSKYITKPFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEAQLREQTEERRNQHANGVGTPSYISPSSKGAANVPEEHKDF
INRVVEKVEALFTNSEKTLDLEPCTGFQRKLIYQTLNWKXVALTPGLXXXTIETEKKERY
IQVSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIH
QFYCPLPEDLQDFKEVTMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSP
QVETDEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPF
FNKLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDD
TSAFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGKQQQQEKEKIGQTAKTWGEDGWV
KAHYTSSTTSGFGYSRALRKRSISPVQGEQGSGEPVITDGWSHYSYPDSTGSKKMKTDDT
SGQANAEAVESKTSEGWLKTGDASDSAGLSPVPDEEESPEGTDPADDADGTITWQQAPAV
HGRKGQKKRKRSLKRRSLQHRCLKSQKSGSEKWDVERPLSHTGLLLRVSS
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaaaaaattataaagactgtttgaacacggtgtacagcgcgatagag
gatgccgacttccttgccatcgatggagaattttcagggataagcgacggccccaatgtc
agtgcactaaccaacgggcttgacacaccagaggagcgatacacgaagctgaaaaagcat
tccatggactttctactgttccagtttggattatgtacgttcaaatacgaccaggcaaag
tcaaagtatatcacgaagccgtttaatttttatatattcccgaaaccattcagcaggact
tctcctgacattaagttcatctgccaaagttccagtattgactttctggccagtcaggga
tttgacttcaacaaggtgttctgtcacggaatcccgtacctaaatcaagacgaggaagcc
cagctgagggagcagacggaggagaggaggaatcagcatgctaacggtgtagggacacca
tcctacatctctccatcctccaaaggtgctgcaaatgtacccgaggagcataaagacttc
atcaacagggtggtagagaaagttgaggccctcttcaccaactcagagaagactttggac
ctggagccatgtactgggtttcagagaaagctgatataccagacactgaactggaagtga
gtggcacttacccctgggctnnnnnnnnnaaccattgaaacagaaaagaaggagcgttac
atccaggtgagcaaagtggatgaagaggagaggaagaggagggagcagcagaaactggag
agagagcaggaggagctcaatgatgctgttggcttctccagggtgatccatgccatctct
aaatctggcaaactcgtggttggccacaacatgctgttggatgtgatgcacaccatccac
cagttctactgcccacttccagaggacctccaagactttaaagaggtcacgatgtgcgtc
ttcccaagaattctggacacaaagttaatggcttccactcagccgtttaaggagctgatc
actaacacctctctggcagagctggagaaacagctgaaggagagccccttcaagtcacca
caagttgaaacggatgaggggttccccagttacgacacagcccaggagcagctccatgag
gcagggtacgatgcctacatcactggcctctgtttcatctccatggccaactacctgggc
tctttcttgactccacccaaagcttacatctcagctcgatccaaactcattgagcctttc
ttcaacaagctgttcctgatgaggataatagatattccctacctcaacatcacaggacca
gatctgcaacccaaaagagaccacgtcctgtatgtcaccttcccaaaagaatggaagacc
agtgacctctaccagctctttagtgcctttgggaacatccaggtttcatggatagatgac
acatcagcatttgtgtccttaagtcaaacagaccaggtgcagatagctatgaacaccagc
cgctatgcagagagctacaggatccagacgtatgcagagtacgtccagggcaagcagcag
caacaggagaaggagaagatcggtcagaccgccaaaacctggggagaggacggctgggtg
aaagctcactacacttcatccactactagtggttttggatattccagggctttgagaaaa
cgcagcatcagcccggttcagggagaacaggggagtggagaacctgtaattacagacggc
tggagtcactactcgtacccagatagcaccggcagcaagaagatgaaaactgatgataca
agtggacaggcaaatgctgaggctgtcgagagcaagacatcagaagggtggctaaagacg
ggagatgcatcagattcagcagggttaagtccagtccctgatgaggaggaaagtcccgag
ggcacagatccagctgatgatgctgacgggacgatcacctggcaacaagccccggcagtc
cacgggaggaaaggtcaaaagaaaagaaaaagaagtctgaagcggcggagtctacaacat
cgctgtttgaagtcccagaagtctggtagcgagaagtgggacgtggagaggccactgtcc
cacactgggctcctgctcagagtctcttcctaa
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