Seriola lalandi dorsalis (Yellowtail amberjack): 111651740
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Entry
111651740 CDS
T06058
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111651740 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111651740 (skiv2l)
Enzymes [BR:
slal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111651740 (skiv2l)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111651740 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
111651740 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
111651740
NCBI-ProteinID:
XP_023257538
Ensembl:
ENSSLDG00000024382
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRINVPPAGPMDLPLSLLEMGCSGRFELITHSLPGQPLPPSSTLPHGLPPTSLNLETEV
EKQFLRDPDWLPIHDTDFAFQKFLKVTKRECNVGSLLNCTPSPLHSSLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSDLE
EDIDFVNGLLRVPPGLKAGMDFTDKDAKMSNPEVNLMSLLSAFDDINLQPEAEEKEEVKG
GEEAPKLPRTNSLEDLGIKDAVSSSTPTEKGTDEKSKPKENPEDKKKWAIPVNITSPCDD
FYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTR
TIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR
DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI
YVISTMKRPVPLEHNLYTGNSTKTQKEMFLLVDAAGNFLTKGYYAAVDAKKERTSKHAQS
FGTKSTSHNTSASQDRAVWLSLLHFLSQRHQTPVVAFTFSRTRCDENARSLESMDLTSSI
EKAEIHSFFQKSLSRLRGGDRQLPQILQMRDLLKRGIAVHHSGILPILKEVIEMLFSRGL
VKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTV
IILCKAGVHEMADLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESHR
DTQAQEKRIGQLKQALSCLPPLDTEGQLSDLMPYYHTVTELRTTTESLQRAILESVNGLK
ALSVGRVVVVNNKQHLNALGVILQVSVSSDSVNRTFTSLIICEKGNEEGDGKGNNTAFPH
LYNTALFIPEGSCSHTVQKLKFQDISAITMKTLKVIPDRIIDNYNKRQQPRFRHDPPGQA
ISTATQELLRLAEANPTGIATLDPVNDLQLKSVDVVEGAMRLRVLQESLKDFNCIHTPTF
AEQFARVKERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLIFTQNTQVEPHITNTLQEGIDRVLT
VAQRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgccccctgcgggccccatggacctgccgctgtcccttctggag
atgggatgctctggcaggtttgagctgatcacacactccctgcccggccaacctctacct
ccatccagcacgctcccccatgggcttcctccaaccagcctgaacctggagacagaagta
gaaaaacagtttttacgggaccccgactggcttcctatacacgacacagactttgccttc
cagaagtttctcaaagtgactaagagagagtgtaatgtcggctctctactcaactgcact
ccgtctccgcttcactcaagtctctctgtggtcagagatccgaccacagggatgctgctg
gacttcacagaggttctacttgagaacaccggcctctcagcaaagaactcactgtcatta
caacgccaacccgggcctccttcagagagcctccgaggaagcaacaccaactaccccttc
ctccctggaggaatggaggagcttacactggagcaaatcaagaagaaatctgacctggag
gaagacatcgactttgtgaatggtttgctcagagtcccacctggtctcaaagctgggatg
gacttcactgacaaagatgccaaaatgtcaaacccagaggtcaacctcatgtccctcctg
tccgcatttgatgacattaacttacaacctgaggcagaggagaaggaggaagtcaaagga
ggtgaagaagctcccaaattacccagaacaaacagccttgaagacctgggcatcaaggat
gctgtgtcatcctccactccaacagagaaaggaacagatgagaaatcaaagccaaaagag
aacccagaggataaaaagaaatgggccatccctgttaacataacttcaccttgtgatgat
ttctataaacgcatccccaacccagctttcaagtggccgtttgagctggatgttttccag
aaacaggctgtgctgaggctggaggctcacgactctgtgtttgtagctgcgcacacatca
gctggcaaaacagtggtggccgagtacgccatcgcgctctcacagaaacacatgacaagg
accatctacacatcccctattaaagctctgtccaatcagaagttcagagactttaagaac
accttcggtgacgttggactcctgacgggcgacgtccagctcagtcctgaatcctcatgt
ctcatcatgaccactgagatcctcaggtctatgctgtacaacggatcagaggtcatcaga
gacttggagtgggtgatctttgacgaggttcactacatcaatgatgccgagagaggagtt
gtgtgggaggaggttttgattatgcttcccgatcacgtcagtatcattctacttagcgcc
acagtgccaaatgccctggagtttagcgaatggatcggtcgtattaagaagaggcatatt
tacgtgatcagcacaatgaagagacctgtgcctttggagcataatctgtacacaggaaac
agcaccaagactcagaaagagatgttcctgctggtggatgctgcaggcaacttcctgact
aaagggtactatgcagctgttgatgcgaagaaggagcgaaccagcaaacatgcacaatca
ttcggcacaaaaagcacttctcacaacacttcagctagtcaggaccgagcggtgtggctc
agcctcctgcacttcctgtcccagcggcatcagaccccggtggttgcgttcaccttctct
cggacgcgctgcgacgagaacgcccgctcgctggagtccatggacctgacctcgtccata
gagaaggccgagatccactccttcttccagaagagcctgagtcgcctccggggaggagac
cgacagctgcctcagatcctgcagatgagggacctgttgaagcggggaatagcagtccat
cacagcgggatcctgccgatactgaaggaggtcatcgagatgctcttctcgcgagggctc
gtaaaggtgctgtttgccaccgagacttttgcaatgggagtgaatatgcccgccaggact
gtggtgttcgacagcatcagaaagcacgacggcaccggcttcagaaatctgctgccaggt
gaatatattcagatggcgggcagagcggggaggagagggctggacgccacaggcaccgtc
attattctgtgtaaagcgggcgttcatgagatggcagatctgcatgtcatgatgctgggt
aagcctaccatcctccagtcccagttcagactgacctacactatgatcctcaacctgctg
cgagtcgaagccctccgtgtgaccgacatgatgagaaggagcttctctgaaagccacaga
gacactcaggctcaggagaagaggatcggccagctgaagcaggcgctgtcctgtctgcct
cctctggacacggagggccagctgtccgacctgatgccttactaccacacagtgacggag
ctacgaaccaccaccgaatccctccagcgtgctattctggagtctgtgaacgggctgaaa
gctctgtctgtgggtcgggttgtggtggttaacaacaaacagcatctcaacgccctgggt
gtcatcctgcaggtaagtgtgtccagtgactctgtgaatcgcacattcacttctctgatc
atctgtgagaaaggaaatgaagaaggagacggaaaaggaaacaacactgccttcccccac
ctctacaacacagctctcttcatacctgaaggctcttgcagccacacagtacagaagctg
aagtttcaggacatttctgccatcacaatgaaaaccctcaaagtgattcctgacaggatc
atcgacaactacaacaagagacaacaaccacgattcaggcacgaccctcccggccaagcc
atctccacggcgacccaggagctcctgcgattggccgaggccaaccccaccggcatagcg
acgctcgaccccgtgaacgacctccagctgaagagcgtggatgtggtggagggcgccatg
aggctccgtgtgctgcaggagagcctcaaagacttcaactgcatacacacgcccactttc
gcagagcagtttgctcgggttaaggagaggatgagtgtgcaggaggagctggacaggctc
ctgttcctggtgtcggaccagtctctgtctctgctgcctgaataccaccagaggatcaag
gttcttcagtccctccagtacgtcgacagcagcggggcggtgcagctgaaaggacgtgta
gcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaagagagcgccgccctgctgtcctgtttgatcttcacacagaac
acacaggtggagccgcacattaccaacacactgcaggagggcatcgatcgggtgctgaca
gtggcccagcgaatcggagagctgcagagggattgtgggataccacagacagctgaggag
tttgtaggccagtttaagtttggtctgacagaggtggtgtactgctgggccagaggcatg
ccgttcgcagagatcgccctgctcacggacgtccaggagggcacggtggtccgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcgacaggccgcccgcattgtgggagactcc
gtcctggggagcaagatggagagggcctccctggccatccgcagggacatcgtcttcacc
gcctctctctacacccactga
DBGET
integrated database retrieval system
