Seriola lalandi dorsalis (Yellowtail amberjack): 111652414
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Entry
111652414 CDS
T06058
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111652414
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111652414
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111652414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
111652414
NCBI-ProteinID:
XP_023258438
LinkDB
All DBs
Position
Unknown
AA seq
1764 aa
AA seq
DB search
MNLGTRRRDCRTSHLDTKRALLLCTVLYCTCYLGLTQVHSEDVDILQKLGLKGEKPSRSV
PAGVIPFKSGIILNQRAHIEAPSRSVFPAAFWPNLALVLSVRSHRVNSAFLFTLLSDRKK
LLLGLQLVPGNLVLHTGPNTSVALPYEPHDGQWHQLAVGINGQRVTLYASCGEQSVHADF
GWDSEEGLAPELQGSFLLGRTSQQQASAHFEGAICQFDLVPSAQAAHNYCRYIKKQCREA
DTYRPNLPPLLPILPRETNITATAAAPNHGGPETARKPKGLSLAKSVAAAASAVRYVAQT
MKPKPGAIPTPLLGTVMPVTVQLGLASPPLKARTETVTAPLRTRAPPTKPPTPRPSTSKA
SNQKPSKPTPPKPTPHNSPKKTTARTDNKKKPTIPATTSTKPSKTKPDYALSDQDAVPKK
PQPTTAKKTSPNPKVTTSKATPSKPKVISVKVVPSKPTASKVSPSKSTISKTATAKTSKP
VSRQVTKPTKPVKTTKAPVTLPPTRPSYNTVTPPATDGFQSWEVPPTQFSLLAGPIGQKG
EAGPSGLPGPPGKPGQPGKRGPRGAPGPHGNPGRAGPPGLKGRKGDPGISPGPAPKGEKG
DSGIIGPVGLIGQAGRKGQRGYPGPPGLPGEPGEQGPVGSPGAKGYPGRQGLPGPIGPLG
PKGIRGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGFPGDFGERGPPGPDGEPGDMG
APGPNGVPGLIGDMGPVGEMGLPGPNGLKGVPGNQGEPGLKGDKGDVGIPGEQGEIGYKG
DKGIQGAPGLPGIRGKPGPQGKLGERGPDGAPGPPGPEGFPGDMGPPGENGLEGPKGKPG
ARGLPGPRGVPGLEGDEGPIGPPGPTGLEGRMGRKGFPGKVGPEGVKGEPGVTGKVGSMG
ERGLVGFIGPVGEEGLAGEKGDRGEMGLPGPPGEKGSTGHPGTPGETGPTGPPGRPGPPG
ATGPAGTRGPKGLRGAIGPDGPTGEMGLEGKKGLDGPPGKIGFPGPQGKMGEEGETGPKG
FPGIQGPSGPPGDKGIPGEPGPPGSPGTVGLLGEIGQKGPPGKVGEPGLPGEPGEKGAIG
AAGNIGEQGLIGQRGEPGLEGEAGPAGPDGTKGEKGDMGQEGDKGEKGEIGLKGKEGPPG
SPGLNGVRGPEGKPGKIGERGKPGSKGAKGHQGHLGETGPVGKTGPPGFVGPKGSRGTIG
HVGAPGRMGQQGEPGLAGYEGHQGPQGPMGSPGPKGEKGEQGDDGKVEGPPGPPGDIGPP
GDRGERGESGDPGYKGQIGVDGERGRPGAPGQPGHPGPRGQQGHKGAKGDQGQKGKKGQT
GQKGTRGTEGGGGLSGPRGVVGREGQEGVPGVDGVPGKDGFKGMPGEHGDDGEAGLPGKA
GSRGKTGVPGLPGDQGGIGPKGEQGLRGQNGPLGKRGFRGGMGLPGPQGDQGPKGQPGDT
GEPGFPGILGVFGPRGPPGDFGPKGIRGPKGPQGTMGRGGVVGPMGIIGPNGSAGPRGEK
GNRGETGLQGPRGSPGPRGPPGLPGPPGVPLSFKEDGLMFVESHTSLRTENRPVMDLPML
DQGAEIFKTLHYLSNLIQSLKNPLGTRDNPARICRDLHSCEQRLNDGTYWIDPNLGCSSD
TVEVSCNFTGGGQTCLKPITVSKPTISVGRVQMNFLQLLSSEAVQHIIIHCLNISVWRSA
EDQPAAQGSVRFKAWTGEVFEVGGDLEPEVIEDSCWIKDGRWHQTHFVFHSLDPTLLPVV
DIYNLPNTTPGSHYHLEVGPVCFL
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggcacccgaaggagagattgcagaacctctcatctagacacaaagagagcc
ctattgctctgtaccgttttatattgtacttgttacctgggacttacacaagtacactct
gaagatgtggacatcctccaaaagttggggcttaagggagagaagccgtcacgctcggtg
ccagcaggggtcattccgttcaaatcagggatcatcctcaaccagcgggcgcacattgag
gctccatcgcgctcagtcttcccagcggccttctggcccaacctggcactggtcctgagt
gtgcgctcacaccgtgtcaacagtgctttcctcttcaccctgctctcagaccgcaagaag
ctacttcttggtctgcagcttgtaccgggcaatctggtccttcacacaggaccaaacacc
tcagtggcactgccctatgagccccatgatggtcagtggcaccagctggcggttggaatt
aatggacagagagtgactctatatgcctcctgcggagagcagagtgttcatgcagacttt
gggtgggacagtgaggagggactggctccagagctccagggctccttcctgctggggcgg
acaagccagcagcaagcctccgcacactttgaaggagccatctgccaatttgacctggtc
ccttctgcacaggcagctcacaactactgcaggtacattaagaaacagtgcagggaagca
gacacatacaggcctaaccttcctcccttgctgccaatcctaccacgagaaacaaacatc
acagctaccgctgctgcccctaatcatggtggcccagaaacggccaggaagcccaagggg
ctgagccttgccaagagtgttgccgctgctgcttcagctgtcagatatgtggcccaaaca
atgaagcccaagcctggggccattcctacaccgctgctgggaactgtgatgccagtcaca
gtccagcttggtttggcctccccacccctgaaggccaggaccgaaactgtcacagcacca
ctcaggacaagagcacccccgacaaaaccaccaaccccaaggccctccacttctaaagct
tcaaatcagaaaccttccaaacccactcccccaaaacctactcctcacaacagccccaaa
aagacaactgcaagaacagacaacaagaaaaaacctactattccagccactaccagcacc
aaaccctccaagacaaaacctgactatgccttatcagaccaagatgcagtcccaaagaaa
ccacaacccaccacagccaagaaaacatctcccaatcctaaagttacaacatccaaagcc
actccatccaaacccaaagtaatttctgtcaaagttgtgccttccaaaccaacagcatcc
aaagtcagcccctcaaaatcaacaatctccaaaactgcaactgctaaaacctccaagcca
gtctccagacaggtcaccaagccaacgaagccagtcaaaacaaccaaggctccagtcacc
ctgccacctaccagaccttcatacaacacagtaacaccacctgccactgatggcttccag
agctgggaggtgccacctactcagttctccctgctggctggacctataggacagaaagga
gaggcgggcccatcgggactgccaggacctccggggaagccaggccagccaggcaagagg
ggtcctcggggcgctcctggtccccatggaaaccctggccgagctggtccacccgggctc
aagggaagaaaaggagaccctggcatctcacctggaccagcacctaaaggagagaagggt
gactcagggattattggcccggttggactgattggacaagcaggccgaaagggacagaga
ggttatcctggtccgcctggactccctggagagcctggagagcaaggtccagtcggaagc
ccaggtgccaaaggttatcctggcaggcagggtttaccggggccaataggaccattgggg
cctaaaggcattcggggtttcattggaatcccggggctttttggcctgcccgggcctgat
ggcgaaagaggaattcccggtgaaccagggaagaggggcaagatgggtaggccggggttt
ccaggggactttggggagagaggaccacctggaccagatggagagccaggtgacatggga
gcccctggtccaaacggagttcctggacttattggtgatatgggacctgtgggagagatg
ggccttccagggcctaatggactgaagggggtgcctggaaatcaaggagaaccaggactg
aaaggtgataagggtgacgttgggattcctggagagcaaggagagatcgggtacaaagga
gacaagggcatccagggggctccaggtttaccaggcattcgtgggaaaccaggacctcag
ggcaagctaggagagagaggccctgatggtgcacccggacctccaggccctgagggtttc
cctggtgacatgggaccaccaggagagaacggccttgaaggaccaaagggaaagccaggg
gccagaggtttaccggggcctcgaggggtgcctggcttggagggagatgaaggcccgatc
ggaccaccaggcccaacaggactcgagggtagaatgggcagaaaaggatttcctgggaag
gttgggccagagggagttaagggggagcctggtgtcacaggaaaagttggctccatggga
gaaagaggcttggtgggtttcatcggacctgtgggagaggaagggctggcaggagagaag
ggggatcgaggggagatgggccttcccggaccacctggagaaaagggatcaacgggtcac
ccagggacaccaggggagaccgggcctacaggaccaccaggaagaccaggcccccctgga
gcgactgggccagccggtaccagaggacccaaaggcttgcggggagcgatagggcctgac
ggtccaacaggagagatggggttagagggcaagaagggtcttgatggtcctccaggaaaa
ataggtttccctggaccacaggggaagatgggagaggaaggggaaactgggcctaaaggt
tttcctggtattcaagggccctcaggacctccaggggacaagggaataccgggcgagccg
ggaccacctgggtcaccagggactgtgggactgttgggagaaataggtcaaaagggtcct
ccaggcaaggtgggggaaccaggactgccaggcgagcccggggagaagggagccattgga
gctgctgggaacatcggagagcaggggctgataggacaacggggagagccaggcctagag
ggagaagctggtccagctggtcctgatggaaccaagggtgaaaagggtgacatgggtcag
gagggcgacaaaggagaaaaaggtgaaattggactaaagggaaaggagggcccacctgga
agtcctggactcaatggcgtcagaggtccagaggggaaacctggcaaaattggggaaaga
ggcaaaccagggtcaaagggtgctaaaggtcatcaaggtcaccttggggagactggacca
gtggggaagacaggaccaccgggttttgttgggccgaaggggtccagaggaactattgga
cacgtgggagctcctggtcgaatgggtcaacagggagaacctggtcttgcaggttatgag
ggccatcagggaccacagggccccatggggtctccaggaccaaaaggtgaaaagggcgag
cagggggatgatgggaaagtagagggtcctcctggtcctccaggtgacataggtcctcca
ggtgacagaggagagagaggggaatcaggagatccggggtacaaaggtcaaattggtgtg
gatggagagagaggcagacctggagctcctggacaacctggacatcctggacctcgcggg
caacaaggacacaaaggggccaaaggagatcaaggtcagaaaggcaaaaagggtcagact
ggacaaaaaggaaccagaggaacagagggagggggtggtctttccggtcccagaggtgtg
gtgggtcgagaggggcaggagggtgtgcccggagtggatggagtcccagggaaggatggc
tttaaaggcatgccgggagagcatggtgatgatggggaggctggtcttcctggcaaagct
ggctcacgtggtaaaactggtgttccaggactcccaggagatcagggtggcattggacca
aagggtgagcagggtcttcgaggccagaatggacctctagggaaaagaggctttagaggt
ggaatggggctgccagggccgcagggagaccaaggacctaaaggacaacctggtgataca
ggggaaccaggttttccaggaattctgggagtttttggaccaagggggcctccaggtgac
tttgggccaaagggcatacggggaccaaaggggccgcagggcacaatgggcagaggagga
gtagttggccctatgggaattattggtcccaatggaagcgcaggtcctagaggagagaag
ggtaatcgcggagagactggattgcaaggaccaaggggatctcctggacctcgtggaccc
cctggacttccaggtcccccgggtgtcccgctatcatttaaagaagacggtctcatgttt
gtggagtcacacacctccctcaggactgagaataggccagtgatggacctgccgatgttg
gaccagggcgcagagatctttaagaccctccactacctcagtaacctgatccagagcctg
aagaacccactgggcactcgggacaacccagcccgcatctgcagggacctgcacagctgt
gaacagaggttaaacgatggcacttattggattgacccgaacctgggctgttcatcagat
acagtagaagtctcctgcaactttactggaggtggacagacttgtctgaaaccaataaca
gtatccaagccaacaatcagtgtcggtcgtgtccagatgaacttcctgcagctgctgagc
tcagaggctgtgcagcacatcatcatccactgcctgaacatctcggtgtggaggtcagct
gaggatcagccggctgcccaagggtctgtgagattcaaggcgtggactggggaggtgttt
gaggtgggaggagaccttgagccagaagtcatagaagactcctgctggataaaagatggt
cgctggcaccagacccattttgtgttccactccctggaccccaccctgctccctgtggtt
gacatctacaatctcccgaacacgactcctggctcacattaccacctagaagtaggtcct
gtgtgcttcctgtga
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integrated database retrieval system
