Seriola lalandi dorsalis (Yellowtail amberjack): 111652915
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Entry
111652915 CDS
T06058
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03013
Nucleocytoplasmic transport
slal03015
mRNA surveillance pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111652915 (casc3)
09122 Translation
03013 Nucleocytoplasmic transport
111652915 (casc3)
03015 mRNA surveillance pathway
111652915 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111652915 (casc3)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111652915 (casc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
111652915
NCBI-ProteinID:
XP_023259078
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPATKSRGRDPDPAEATVARPEAKSDVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEQYSDEEAPAAATEPKPPAADSP
AQGGEGEREEEAEGEGGGQSKEESKPEEKGNLAGERQSGDGQESTDDPETKAGGKAGQQL
DDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHDKFREEEQAPK
SREELIAIYGYDIRNGGGHGDRSYRQRRPRGVVSRGGRSGGGRGGPSVVIEDITVSHGGV
GEQDLSVSAVTTAASSQPGGYQSASPRRQQQEQRGSADRSGSAASSSTSDPSLQSSAAAT
NREASPPAERPVERKSYSLARRTRSRPADLGSKQPSMEESAAGGNASSPGSVGGKSWTGA
GDGPNQAAGGGGAGGGAGGGAGGGAGGGGGLTELDQDVARLSLAGQSWSQSPTSYMRSEM
RGLPNPMHIPGGPPQFSSMEEMGGPSNRAKRYSSQRQRAVPEPAPPMHLGVMEGHYYEPM
SYQGPIYAHGDGPAPIPPQGMLVQPEMHIPHPGLHPHQSGGPIANPAIYGGPPVSLPPPF
YPPPGVMTFPYPAMYPNPQGQSQVTYGGVTYYDTVQQQAQPKPSPPRRTSQPVTVKPPPP
EVPFASE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggagatcggggtccccggcgaccaagagccgagggagg
gatcccgacccggcggaggcgacagtggcccgccccgaggcgaagagcgacgttgagtcc
gagtgtgagagtgaagatggggtgggagaagctgtcctctctgactacgacagtgccgat
ccagaggagaacggttcccactcagagggagtggaggaggaagaggaggccgagcagtac
agcgacgaagaagctccggcagcagccaccgagcccaaaccccctgctgccgacagccca
gcacagggaggggagggcgagagggaggaggaggcagagggggagggaggaggacagagt
aaagaggagagcaaacctgaggagaaaggaaatctagcaggagagagacagagcggcgac
ggccaggagtccacagacgatcctgagacgaaggcgggaggaaaagccggtcagcagctc
gacgatgacgaggacaggaaaaacccggcctacatccccaggaagggcctgttcttcgag
cacgacgtcagaggacacgctcaggaggaggagagacctaaaggtcgaaacaggaagctg
tggaaagacgagggtcgctgggagcacgacaagttcagggaggaggagcaggcgcccaag
agccgcgaggagctcatcgccatttacggttatgacatccgaaacggcggcggccacgga
gaccggtcgtacagacagcgcaggcccaggggtgtggtcagcagaggggggcgtagcggt
ggggggagggggggtccctctgtggtcattgaggacattacagtcagccatggcggcgtt
ggggaacaggacctgagtgtaagcgctgtaacgacggcggcatcgtcacagccgggcggt
taccagtctgcctcaccgaggcgacagcagcaggaacaacgagggagcgcagacagatct
ggatcggctgcttcctcctccacctctgacccctcccttcagtcatcagcagcagcgacc
aatcgggaagcctctcctcccgccgagcggccagtggagcgtaaatcttactctctggct
cgcaggactcgctctcggcccgcagacctgggcagcaaacagccgtccatggaagagtct
gcggccggagggaacgcctcctcccccggcagtgtgggagggaagagctggacgggagca
ggagacgggccaaatcaggcggcgggaggaggaggagcaggaggaggagcaggaggagga
gcaggcggaggagcaggcggaggaggaggactgacggagctggaccaggacgtggctcga
ctcagtctggcaggacagagctggagtcagagcccgacgtcatacatgcgctctgagatg
agaggccttcccaacccaatgcacatccccggcggcccgcctcagttctccagcatggag
gagatgggcggcccctccaatcgggccaaacgctactcctcccaacgccagagagccgta
cctgagccggcaccgcccatgcacctgggtgtgatggagggacactactacgaacccatg
tcgtaccagggaccaatctatgctcatggggatggccccgcccccatcccaccgcaaggc
atgctggtccagcctgagatgcacatcccccaccccggtctccacccccaccaatcaggc
ggcccgatcgctaaccccgccatctacggaggcccacctgtatctctgccaccgcctttc
taccctccgccgggcgtcatgaccttcccttatcccgccatgtacccgaacccacagggt
cagtcccaggtgacctacggaggcgtgacgtactacgacacggtgcagcagcaggctcag
cccaagccttcacccccccgccgcacatcccagcccgtcaccgtcaagcccccccctcca
gaggtgccctttgcctcagagtga
DBGET
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