Seriola lalandi dorsalis (Yellowtail amberjack): 111653729
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Entry
111653729 CDS
T06058
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111653729 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111653729 (xab2)
03041 Spliceosome [BR:
slal03041
]
111653729 (xab2)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111653729 (xab2)
Spliceosome [BR:
slal03041
]
Complex B
Other components
Prp19-related factors
111653729 (xab2)
Complex C
111653729 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
SNAP
Tcf25
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
111653729
NCBI-ProteinID:
XP_023260161
Ensembl:
ENSSLDG00000000977
UniProt:
A0A3B4WFB6
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKTDVVFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCITETAYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDEDDDQGPEEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccatccttaaacggaaaaactgatgttgtgtttgaggacgatgatctgccttatgaa
gaggagatcatcaggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggacccaaatccaccctgaacatgatatatgagcgggctcttaaagagttgcct
ggcagctataaactgtggtacagttatctgagagagagacggaaacaagtcaaaggaaaa
tgtatcactgaaacagcctatgaggaggtcaataattgccatgaaagggcactggtattc
atgcacaagatgcctagaatatggctagattactgccagttccttgtgtctcaatgcaag
atcacgagaagtcggcgaacatttgaccgtgcactcagagctcttcctgtcactcagcac
ccacgcatctggcctctgtatctccgctttgttcgtaacctgcccctgcctgagacagct
atccgggtgtatcgcaggtaccttaagctttctccagaaaatgcagaggaatacatagac
tacttacgttctgttggccgcttggatgaagcagctttgagactagcagctgttgtcaat
gatgaaagctttgtgtccaaagagggcaaatccaactatcaactgtggcatgagctgtgc
gacctgatctcccagaaccctgataaggtgacctctctgaatgtgggagccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaaactttggtgctctttggctgactat
tacatcaggagtggccactttgagaaagcccgcgatgtgtatgaggaggccatccttaca
gtggtaacagtaagggatttcacacaagtgtttgacagttatgcccagtttgaggagagc
atgattgctgccaagatggagaccactgctgagatggggcaggatgaagatgatgacata
gacctggagctcagactggcccgctttgagcagctgatagcgcggcggcccctcctcttg
aacagtgtactgctgagacagaaccctcataatgtccatgagtggcacaagcgggtaaag
ttgtatgagggcaatccacggcagattatcaacacttatactgaagcagtacagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgcaaaattctat
gaggaaaatgagcagctggatgatgccaggacaatatttgagaaggctaccaaggtgaac
tacaagcaggtagatgaccttgctgcagtgtggtgtgaatatggagagatggagcttcgc
cacgagaactatgaacaggcactgcgcatactgaggaaagctactgccatcccatccaag
aaagcagagtactttgatgcatctgagccagtccagaacagagtgtacaagtctttgaag
gtctggtctatgctggcagacttggaggagagtcttggcaccttccagtctacaaaagca
gtgtatgaccgcattattgacctccgcatcgcaacgccacagatcattatcaattatgcc
atgttccttgaagagcacaactactttgaagaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggcccaatgtgtatgacatctggaacacttacctcaccaagttcatt
gatcgatatgggggcaaaaagctggagagagcgagagatttatttgaacaagcgctggat
ggctgccccgccaagtttgccaagacaatttacctgttgtatgccaaattggaggaggag
tatgggttggcacgacacgccatggctgtctatgaaagagcaacacaggcagtagaaact
gaggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtt
acctataccagagcaatttaccaaaaagctattgaggtccttcctgatgagcatgcgagg
gatatgtgtcagcgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctaatttctggcag
acctggaaagaatttgagatccgccatggtaatgaggacaccattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
ctgaaggccacaacaagtgccacaggcactgtgtcagatcttgctccaggccaaatggga
attgatgacatgaagatgttggagcagaaagcacagcagcttgctgcagaagctgaacag
gacaaacccaagcccaaagagaagattctctttgttaggagtgatacttctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagattgacattgatgatgatgacgag
gatgaagatgatgaccaaggaccggaggaggtgcagcttgagcagaagagtgtccccaca
gctgtctttggaggccttaaagatgactga
DBGET
integrated database retrieval system
