Seriola lalandi dorsalis (Yellowtail amberjack): 111654436
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Entry
111654436 CDS
T06058
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382
Cornified envelope formation
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111654436
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111654436
09142 Cell motility
04820 Cytoskeleton in muscle cells
111654436
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111654436
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111654436
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111654436
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111654436
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111654436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111654436
NCBI-ProteinID:
XP_023261216
LinkDB
All DBs
Position
Unknown
AA seq
1909 aa
AA seq
DB search
MGSSCTVVTMSSLRWILVLVIFVQQLNAGRIEGPCQGRDCSVCQCFPVKGARGAPGKRGQ
QGLTGPMGRRGHEGPPGDKGRRGAEGSHGPEGPIGERGNTGVPGFPGNIGSSGYPGAGGE
PGLPGLDGCNGTRGQPGIPGVPGFNGLCGPPGLIGPKGTKGEPLQGALPGLPGERGRDGE
HGLPGRKGDIGHQGYTGPPGLNGPEGLAGPKGVRGLPGNPGGSLAGDNGDDGEQGPPGPP
GVEEVIEFPPDFLPPKGYKGDRGLPGPCGPKGKRSDIGDYNREEIKGEQGILGFPGNRGL
LGTRGRTGTTGPQGLHGERGLPGLIGRIGPKGYQGDPGLPGPTYFHNGSDARGAKGEYGY
PGASGLPGDPGEMGMHGPPGPSGLTILVAPGLTGPTGPRGPKGYKGEPGRYEEINPFPGQ
KGIKGLPGPKGVTGRPGPPGCGDYYCEPGYPGEDGDPGSQGPPGHKGLRGIKGCEGGCEC
TSGGGRIGPPGPLGFPGPPGLPGAQGLRGDPGLQGDDGPRGPQGFPGLAGVNGQKGQKGD
SLVLGGKGAKGDQGLSGQQGPPGATGRPGLDGPPGHSGDPGPPGAGYPGLPGPKGDPGVV
GPKGFPGIVGPTGLGTPGPIGPPGPKGNPGHTGPPGIPGRPGPPGEIEECCHEIEIGSPG
TKGERGIPGIPGEPGRDGFPGIPGHQGVKGMKGDDGDYVSPGLPGPPGLNGDPGDHGPVG
DSLDGPPGSPGLSGLPGRKGAPGDALFASQGAIGPPGYLGAVGANGPRGFPGNPGSPGIQ
GQPGQPGRKGEPGFNGDPGATGFPGPPCTICDLHGVPGPPGLRGNPGLMGVPGYHGQKGL
KGHIGPPGHGQKGPRGFSGPPGVPGPPGPRGITGSPGDPGLDGWPGPKGETGYPGRAGAR
GISGRPGPPGPRGKQGERGFNGQPGDTGDPGLPGNKGSTGLPGLPGQTSVNLIKGSAGLS
GRKGQKGQQGLAGSKGIRGIPGDPGPDGQLGPEGCKGSIGAPGRSGIPGPPGHPGIKGFP
GPRGNPGHGGDPGDPGPAGQRGIPGLPGFPGAKGDPGQSYGQPGPPGPKGFPGENGPSAP
RGIPGDPGDPGLRGRPGQPGQPGTPGEPGRQGGLGLPGPHGPRGLPGFPGIPGDHGGLGP
CGPPGPYGPQGPRGPPGLDGLNGLRGPKGMKGGCGKAIHGPPGPDGFPGPKGLRGRPGPP
GDYFTWPKGPRGLPGDKGLPGLPGEPGYPGKDCTSSPGPCGDIGYEGPPGLPGPPGKRGP
PGSSILSIGDPGPKGFPGLPGRKGDRGFPGPPGPQYKPGFDGPKGDKGRSGTRGAPGPKG
QQGLPGPWGLKGQTGPAGETGETGYPGRAGARGISGRPGPPGPRGKQGERGFNGQPGDTG
DPGLPGNKGSTGLPGLPGQTSVNLIKGSAGLSGRKGQKGQQGLAGSKGIRGIPGDPGPDG
QLGPEGCKGSIGAPGRSGIPGPPGHPGIKGFPGPRGNPGHGGDPGDPGPAGQRGIPGLPG
FPGAKGDPGQSYGQPGPPGPKGFPGENGPSAPRGIPGDPGDPGLRGRPGQPGQPGTPGEP
GRQGGLGLPGPHGPRGLPGFPGIPGDHGGLGPCGPPGPYGPQGPRGPPGLDGLNGLRGPK
GMKGGCGEKGSIGSVGFPGLPGPAGPNGPVGDPGEAGQRGFTGPQGIPGAPGDPGGPGCR
GALRSGFLLVIHSQSVKVPLCPVGSSQLWAGYSLAYLEGQEKAHTQDLGQAGSCLRVFST
MPFSYCNKAACHYSSRNDKSYWLSTTAPIPMMPLFGQHISQHISRCVVCETVSPAVAFHS
QDQTVPACPPGWRSLWTGYSFILHTGAGDKGGGQSLTSSGSCLKDFRTHPFIECQGPRGS
CHYFTNLYSFWLTTVSQTEQFNAATPDTIKAADQQRRKASQCHVCLREK
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgggatcctcatgtactgttgtgactatgtcctctctaagatggatccttgtactggta
atctttgtgcagcagctcaatgcagggcggattgagggtccatgccagggaagagactgc
tctgtatgtcagtgttttcctgtcaaaggtgcacggggagctccaggaaagcgagggcag
caaggcctcacgggaccaatgggacgaaggggacatgaggggccacctggagacaagggc
aggaggggagcagagggatcgcacggcccagaggggcccataggagaacgtggcaacact
ggtgttcctggttttcctggtaatattggctcatcaggttaccctggagcaggcggcgag
cctggtttgccaggattggatggctgtaatgggacaaggggtcaaccagggatccctggt
gttcctggtttcaatggtctctgtgggccgccgggattaattggacctaaaggaactaaa
ggagagcctttgcaaggcgcccttccgggacttcctggggagcgtgggagagatggagaa
catggtttacctggaaggaaaggagacattggacatcaaggctacactggccctcctggt
cttaatggacctgagggcttggcaggacctaaaggtgtcagaggactaccaggaaaccct
ggaggatcactggcaggggataacggtgacgatggtgagcaaggcccacctggcccccca
ggagtagaagaagtcatagaatttcctccagactttcttcctcccaaaggttacaaggga
gataggggtcttcctggaccatgtggaccaaagggcaaaaggagtgatataggagactac
aacagagaagaaattaaaggggagcaaggaatccttgggtttcctggaaatcggggtctt
ttaggaactcgtggtagaactggaacaacaggacctcagggtctgcatggagagagggga
ctaccaggcctcattggaagaattggtccaaagggctaccaaggagatccaggtctccct
ggtcccacgtactttcataatggcagtgatgccagaggtgctaaaggtgaatatgggtat
ccaggagcgtctggactcccaggagaccccggggagatgggcatgcatggacctcctggc
ccatcagggttaacaatactagtggcgccaggtctgactggtccaacagggccccgaggt
ccaaagggctacaagggcgaaccagggaggtatgaagaaatcaatccattcccaggacaa
aagggaattaaagggctccccggacctaaaggtgtcacaggccgccctggtcctccagga
tgtggagattattactgtgagcctggttaccctggcgaagatggtgacccaggatcccaa
ggacctcctggacacaaagggctgagaggaattaaaggttgtgaaggtggatgtgaatgt
acatctggtgggggaagaatagggccccctggtccacttggttttccaggacctccaggg
ttacctggagctcaaggacttaggggggacccaggacttcaaggagatgatggaccaaga
ggaccacaaggctttccaggacttgctggtgtaaatggacagaagggtcagaaaggtgac
tctttagtgttgggtggtaaaggtgccaagggtgaccaaggactgtctggtcaacagggc
cctcctggagcaacaggtaggccaggactggatggtccccctggccattcaggagaccct
ggaccaccaggtgctggatatccaggattacctggtcccaaaggtgaccctggggttgtt
ggacccaaaggttttccagggatcgtaggccccacaggtcttggtactcccggccccata
gggccacctggacctaaaggaaatccgggacatactggccccccaggaattcctggacga
ccaggccctccaggtgaaattgaggaatgctgtcatgaaattgagattgggtcacctggt
actaagggtgagcgaggcatcccagggattccaggtgagccagggagagatggttttccc
ggaattccgggacaccaaggcgttaaaggcatgaaaggagatgatggtgattatgtaagc
cctggactgccaggacctccaggtttaaatggggatccaggggaccatggtcctgttggg
gatagcctggatggccctccaggctctcctgggttatcaggactcccaggcaggaagggt
gccccaggagatgccctctttgccagtcaaggtgctattggcccacctggctaccttggg
gcagtgggggcaaatggacctcgtggctttcctggaaacccagggtctccaggcatacaa
ggccaacctggacaaccaggccgtaaaggagagccaggattcaatggtgaccctggtgcc
actggtttcccaggcccaccttgtactatttgtgacctgcatggagttccaggccctcca
ggacttcgaggaaaccctggactgatgggagtaccaggctaccatggtcagaagggttta
aagggacatataggtccacctggtcatggacagaagggtcctcgaggtttctctggccct
cccggtgtaccaggcccacctggaccaagaggcatcactggctctccaggagatccgggg
cttgatggctggccaggaccaaaaggtgaaacgggctaccctggcagggctggagcaaga
ggtatatcaggtcgtcctggacccccagggcccagaggtaaacagggagagagaggcttt
aatggtcaaccaggtgacacaggagacccaggactgcctggtaataaaggttcaactggt
ctcccaggactaccaggccaaacgagtgtgaatttgataaaaggctcagcgggactttca
ggaagaaagggacaaaaaggccaacaaggacttgcaggctcaaagggcataaggggaata
cccggtgacccagggcctgatggacagcttggtccggaagggtgtaagggcagcattggt
gctccaggcaggtcaggaataccaggtcctcctggacaccctggaatcaaaggtttccct
ggtccaaggggaaatcctgggcatggtggagatccgggagatccagggcctgcaggacaa
aggggtatacctgggctaccaggatttccaggtgccaagggggatccaggacagtcttat
ggacaacctggtccacctggacccaaaggatttccaggggaaaatggacccagtgcaccc
agagggattccaggagatccaggtgacccaggactcaggggaaggccaggacagcctgga
caaccaggcactccgggggaaccaggaagacaaggaggactaggcttacccgggcctcat
ggcccacgaggccttccaggttttccaggtattccaggtgatcatggaggtctgggacca
tgcggtccacctggcccatatgggcctcaagggccccgtggaccaccaggtctggatgga
ttgaatgggctaagagggccaaaagggatgaaaggaggatgtggcaaagctattcatggc
cctccaggaccagatggttttcctgggcccaaaggcctgaggggccgcccaggccctcca
ggagactattttacttggcccaaaggcccaaggggccttcctggtgacaaaggtcttcca
ggtttaccaggggaacctggttaccctggcaaagactgcacatcttcaccaggaccctgt
ggagatataggatatgaaggacctccaggactcccaggtcctcctgggaaacggggccct
ccaggcagcagcattttgtccataggagacccaggacccaaaggtttccctgggttacct
ggtcgtaagggagataggggcttcccaggacctcctggacctcaatacaaacctggcttt
gacggtccaaaaggtgataaaggtcgcagtggtaccaggggtgctccaggacccaaaggt
cagcaaggcctacctgggccctggggtctcaagggacaaactggcccagctggagaaaca
ggtgaaacgggctaccctggcagggctggagcaagaggtatatcaggtcgtcctggaccc
ccagggcccagaggtaaacagggagagagaggctttaatggtcaaccaggtgacacagga
gacccaggactgcctggtaataaaggttcaactggtctcccaggactaccaggccaaacg
agtgtgaatttgataaaaggctcagcgggactttcaggaagaaagggacaaaaaggccaa
caaggacttgcaggctcaaagggcataaggggaatacccggtgacccagggcctgatgga
cagcttggtccggaagggtgtaagggcagcattggtgctccaggcaggtcaggaatacca
ggtcctcctggacaccctggaatcaaaggtttccctggtccaaggggaaatcctgggcat
ggtggagatccgggagatccagggcctgcaggacaaaggggtatacctgggctaccagga
tttccaggtgccaagggggatccaggacagtcttatggacaacctggtccacctggaccc
aaaggatttccaggggaaaatggacccagtgcacccagagggattccaggagatccaggt
gacccaggactcaggggaaggccaggacagcctggacaaccaggcactccgggggaacca
ggaagacaaggaggactaggcttacccgggcctcatggcccacgaggccttccaggtttt
ccaggtattccaggtgatcatggaggtctgggaccatgcggtccacctggcccatatggg
cctcaagggccccgtggaccaccaggtctggatggattgaatgggctaagagggccaaaa
gggatgaaaggaggatgtggagagaagggttctatagggtctgtgggcttccctggtcta
ccaggtcctgctggtcctaatggtcctgtcggagacccaggagaagcaggtcagcgagga
tttactggacctcaaggtatcccaggtgcaccgggtgatccaggtgggccaggctgtagg
ggggcactgagatcaggcttccttttggttattcacagccagtcagttaaggtgccgctg
tgccctgtaggcagcagtcagctttgggcgggctacagtctggcgtacctggagggacaa
gagaaggctcacacacaggacctgggccaggctggctcctgcctccgcgttttctccacc
atgcctttctcctactgcaacaaagctgcctgtcactactccagtcgcaacgacaaatcc
tattggctgtccaccactgctcccatacccatgatgcccctgttcggccagcacatcagc
cagcacatcagccgctgcgttgtttgtgagacagtttctcccgcagtggcttttcacagc
caggatcagacggttcctgcatgcccacctggctggaggagtctgtggacgggttactct
ttcattctgcacactggggcaggtgataaagggggcggccagtctctgacctcttctgga
agctgccttaaggatttcagaactcatcccttcatagagtgccagggcccacgaggctcc
tgccactacttcaccaacctctacagtttttggctgactactgtgagtcagacagagcag
tttaacgccgcgacgcccgacaccatcaaagcagccgaccaacagcgacgcaaggccagt
cagtgccacgtctgcctcagagaaaaataa
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integrated database retrieval system
