Seriola lalandi dorsalis (Yellowtail amberjack): 111654436
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Entry
111654436 CDS
T06058
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111654436
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111654436
09142 Cell motility
04820 Cytoskeleton in muscle cells
111654436
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111654436
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111654436
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111654436
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111654436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111654436
NCBI-ProteinID:
XP_023261216
LinkDB
All DBs
Position
Unknown
AA seq
1909 aa
AA seq
DB search
MGSSCTVVTMSSLRWILVLVIFVQQLNAGRIEGPCQGRDCSVCQCFPVKGARGAPGKRGQ
QGLTGPMGRRGHEGPPGDKGRRGAEGSHGPEGPIGERGNTGVPGFPGNIGSSGYPGAGGE
PGLPGLDGCNGTRGQPGIPGVPGFNGLCGPPGLIGPKGTKGEPLQGALPGLPGERGRDGE
HGLPGRKGDIGHQGYTGPPGLNGPEGLAGPKGVRGLPGNPGGSLAGDNGDDGEQGPPGPP
GVEEVIEFPPDFLPPKGYKGDRGLPGPCGPKGKRSDIGDYNREEIKGEQGILGFPGNRGL
LGTRGRTGTTGPQGLHGERGLPGLIGRIGPKGYQGDPGLPGPTYFHNGSDARGAKGEYGY
PGASGLPGDPGEMGMHGPPGPSGLTILVAPGLTGPTGPRGPKGYKGEPGRYEEINPFPGQ
KGIKGLPGPKGVTGRPGPPGCGDYYCEPGYPGEDGDPGSQGPPGHKGLRGIKGCEGGCEC
TSGGGRIGPPGPLGFPGPPGLPGAQGLRGDPGLQGDDGPRGPQGFPGLAGVNGQKGQKGD
SLVLGGKGAKGDQGLSGQQGPPGATGRPGLDGPPGHSGDPGPPGAGYPGLPGPKGDPGVV
GPKGFPGIVGPTGLGTPGPIGPPGPKGNPGHTGPPGIPGRPGPPGEIEECCHEIEIGSPG
TKGERGIPGIPGEPGRDGFPGIPGHQGVKGMKGDDGDYVSPGLPGPPGLNGDPGDHGPVG
DSLDGPPGSPGLSGLPGRKGAPGDALFASQGAIGPPGYLGAVGANGPRGFPGNPGSPGIQ
GQPGQPGRKGEPGFNGDPGATGFPGPPCTICDLHGVPGPPGLRGNPGLMGVPGYHGQKGL
KGHIGPPGHGQKGPRGFSGPPGVPGPPGPRGITGSPGDPGLDGWPGPKGETGYPGRAGAR
GISGRPGPPGPRGKQGERGFNGQPGDTGDPGLPGNKGSTGLPGLPGQTSVNLIKGSAGLS
GRKGQKGQQGLAGSKGIRGIPGDPGPDGQLGPEGCKGSIGAPGRSGIPGPPGHPGIKGFP
GPRGNPGHGGDPGDPGPAGQRGIPGLPGFPGAKGDPGQSYGQPGPPGPKGFPGENGPSAP
RGIPGDPGDPGLRGRPGQPGQPGTPGEPGRQGGLGLPGPHGPRGLPGFPGIPGDHGGLGP
CGPPGPYGPQGPRGPPGLDGLNGLRGPKGMKGGCGKAIHGPPGPDGFPGPKGLRGRPGPP
GDYFTWPKGPRGLPGDKGLPGLPGEPGYPGKDCTSSPGPCGDIGYEGPPGLPGPPGKRGP
PGSSILSIGDPGPKGFPGLPGRKGDRGFPGPPGPQYKPGFDGPKGDKGRSGTRGAPGPKG
QQGLPGPWGLKGQTGPAGETGETGYPGRAGARGISGRPGPPGPRGKQGERGFNGQPGDTG
DPGLPGNKGSTGLPGLPGQTSVNLIKGSAGLSGRKGQKGQQGLAGSKGIRGIPGDPGPDG
QLGPEGCKGSIGAPGRSGIPGPPGHPGIKGFPGPRGNPGHGGDPGDPGPAGQRGIPGLPG
FPGAKGDPGQSYGQPGPPGPKGFPGENGPSAPRGIPGDPGDPGLRGRPGQPGQPGTPGEP
GRQGGLGLPGPHGPRGLPGFPGIPGDHGGLGPCGPPGPYGPQGPRGPPGLDGLNGLRGPK
GMKGGCGEKGSIGSVGFPGLPGPAGPNGPVGDPGEAGQRGFTGPQGIPGAPGDPGGPGCR
GALRSGFLLVIHSQSVKVPLCPVGSSQLWAGYSLAYLEGQEKAHTQDLGQAGSCLRVFST
MPFSYCNKAACHYSSRNDKSYWLSTTAPIPMMPLFGQHISQHISRCVVCETVSPAVAFHS
QDQTVPACPPGWRSLWTGYSFILHTGAGDKGGGQSLTSSGSCLKDFRTHPFIECQGPRGS
CHYFTNLYSFWLTTVSQTEQFNAATPDTIKAADQQRRKASQCHVCLREK
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgggatcctcatgtactgttgtgactatgtcctctctaagatggatccttgtactggta
atctttgtgcagcagctcaatgcagggcggattgagggtccatgccagggaagagactgc
tctgtatgtcagtgttttcctgtcaaaggtgcacggggagctccaggaaagcgagggcag
caaggcctcacgggaccaatgggacgaaggggacatgaggggccacctggagacaagggc
aggaggggagcagagggatcgcacggcccagaggggcccataggagaacgtggcaacact
ggtgttcctggttttcctggtaatattggctcatcaggttaccctggagcaggcggcgag
cctggtttgccaggattggatggctgtaatgggacaaggggtcaaccagggatccctggt
gttcctggtttcaatggtctctgtgggccgccgggattaattggacctaaaggaactaaa
ggagagcctttgcaaggcgcccttccgggacttcctggggagcgtgggagagatggagaa
catggtttacctggaaggaaaggagacattggacatcaaggctacactggccctcctggt
cttaatggacctgagggcttggcaggacctaaaggtgtcagaggactaccaggaaaccct
ggaggatcactggcaggggataacggtgacgatggtgagcaaggcccacctggcccccca
ggagtagaagaagtcatagaatttcctccagactttcttcctcccaaaggttacaaggga
gataggggtcttcctggaccatgtggaccaaagggcaaaaggagtgatataggagactac
aacagagaagaaattaaaggggagcaaggaatccttgggtttcctggaaatcggggtctt
ttaggaactcgtggtagaactggaacaacaggacctcagggtctgcatggagagagggga
ctaccaggcctcattggaagaattggtccaaagggctaccaaggagatccaggtctccct
ggtcccacgtactttcataatggcagtgatgccagaggtgctaaaggtgaatatgggtat
ccaggagcgtctggactcccaggagaccccggggagatgggcatgcatggacctcctggc
ccatcagggttaacaatactagtggcgccaggtctgactggtccaacagggccccgaggt
ccaaagggctacaagggcgaaccagggaggtatgaagaaatcaatccattcccaggacaa
aagggaattaaagggctccccggacctaaaggtgtcacaggccgccctggtcctccagga
tgtggagattattactgtgagcctggttaccctggcgaagatggtgacccaggatcccaa
ggacctcctggacacaaagggctgagaggaattaaaggttgtgaaggtggatgtgaatgt
acatctggtgggggaagaatagggccccctggtccacttggttttccaggacctccaggg
ttacctggagctcaaggacttaggggggacccaggacttcaaggagatgatggaccaaga
ggaccacaaggctttccaggacttgctggtgtaaatggacagaagggtcagaaaggtgac
tctttagtgttgggtggtaaaggtgccaagggtgaccaaggactgtctggtcaacagggc
cctcctggagcaacaggtaggccaggactggatggtccccctggccattcaggagaccct
ggaccaccaggtgctggatatccaggattacctggtcccaaaggtgaccctggggttgtt
ggacccaaaggttttccagggatcgtaggccccacaggtcttggtactcccggccccata
gggccacctggacctaaaggaaatccgggacatactggccccccaggaattcctggacga
ccaggccctccaggtgaaattgaggaatgctgtcatgaaattgagattgggtcacctggt
actaagggtgagcgaggcatcccagggattccaggtgagccagggagagatggttttccc
ggaattccgggacaccaaggcgttaaaggcatgaaaggagatgatggtgattatgtaagc
cctggactgccaggacctccaggtttaaatggggatccaggggaccatggtcctgttggg
gatagcctggatggccctccaggctctcctgggttatcaggactcccaggcaggaagggt
gccccaggagatgccctctttgccagtcaaggtgctattggcccacctggctaccttggg
gcagtgggggcaaatggacctcgtggctttcctggaaacccagggtctccaggcatacaa
ggccaacctggacaaccaggccgtaaaggagagccaggattcaatggtgaccctggtgcc
actggtttcccaggcccaccttgtactatttgtgacctgcatggagttccaggccctcca
ggacttcgaggaaaccctggactgatgggagtaccaggctaccatggtcagaagggttta
aagggacatataggtccacctggtcatggacagaagggtcctcgaggtttctctggccct
cccggtgtaccaggcccacctggaccaagaggcatcactggctctccaggagatccgggg
cttgatggctggccaggaccaaaaggtgaaacgggctaccctggcagggctggagcaaga
ggtatatcaggtcgtcctggacccccagggcccagaggtaaacagggagagagaggcttt
aatggtcaaccaggtgacacaggagacccaggactgcctggtaataaaggttcaactggt
ctcccaggactaccaggccaaacgagtgtgaatttgataaaaggctcagcgggactttca
ggaagaaagggacaaaaaggccaacaaggacttgcaggctcaaagggcataaggggaata
cccggtgacccagggcctgatggacagcttggtccggaagggtgtaagggcagcattggt
gctccaggcaggtcaggaataccaggtcctcctggacaccctggaatcaaaggtttccct
ggtccaaggggaaatcctgggcatggtggagatccgggagatccagggcctgcaggacaa
aggggtatacctgggctaccaggatttccaggtgccaagggggatccaggacagtcttat
ggacaacctggtccacctggacccaaaggatttccaggggaaaatggacccagtgcaccc
agagggattccaggagatccaggtgacccaggactcaggggaaggccaggacagcctgga
caaccaggcactccgggggaaccaggaagacaaggaggactaggcttacccgggcctcat
ggcccacgaggccttccaggttttccaggtattccaggtgatcatggaggtctgggacca
tgcggtccacctggcccatatgggcctcaagggccccgtggaccaccaggtctggatgga
ttgaatgggctaagagggccaaaagggatgaaaggaggatgtggcaaagctattcatggc
cctccaggaccagatggttttcctgggcccaaaggcctgaggggccgcccaggccctcca
ggagactattttacttggcccaaaggcccaaggggccttcctggtgacaaaggtcttcca
ggtttaccaggggaacctggttaccctggcaaagactgcacatcttcaccaggaccctgt
ggagatataggatatgaaggacctccaggactcccaggtcctcctgggaaacggggccct
ccaggcagcagcattttgtccataggagacccaggacccaaaggtttccctgggttacct
ggtcgtaagggagataggggcttcccaggacctcctggacctcaatacaaacctggcttt
gacggtccaaaaggtgataaaggtcgcagtggtaccaggggtgctccaggacccaaaggt
cagcaaggcctacctgggccctggggtctcaagggacaaactggcccagctggagaaaca
ggtgaaacgggctaccctggcagggctggagcaagaggtatatcaggtcgtcctggaccc
ccagggcccagaggtaaacagggagagagaggctttaatggtcaaccaggtgacacagga
gacccaggactgcctggtaataaaggttcaactggtctcccaggactaccaggccaaacg
agtgtgaatttgataaaaggctcagcgggactttcaggaagaaagggacaaaaaggccaa
caaggacttgcaggctcaaagggcataaggggaatacccggtgacccagggcctgatgga
cagcttggtccggaagggtgtaagggcagcattggtgctccaggcaggtcaggaatacca
ggtcctcctggacaccctggaatcaaaggtttccctggtccaaggggaaatcctgggcat
ggtggagatccgggagatccagggcctgcaggacaaaggggtatacctgggctaccagga
tttccaggtgccaagggggatccaggacagtcttatggacaacctggtccacctggaccc
aaaggatttccaggggaaaatggacccagtgcacccagagggattccaggagatccaggt
gacccaggactcaggggaaggccaggacagcctggacaaccaggcactccgggggaacca
ggaagacaaggaggactaggcttacccgggcctcatggcccacgaggccttccaggtttt
ccaggtattccaggtgatcatggaggtctgggaccatgcggtccacctggcccatatggg
cctcaagggccccgtggaccaccaggtctggatggattgaatgggctaagagggccaaaa
gggatgaaaggaggatgtggagagaagggttctatagggtctgtgggcttccctggtcta
ccaggtcctgctggtcctaatggtcctgtcggagacccaggagaagcaggtcagcgagga
tttactggacctcaaggtatcccaggtgcaccgggtgatccaggtgggccaggctgtagg
ggggcactgagatcaggcttccttttggttattcacagccagtcagttaaggtgccgctg
tgccctgtaggcagcagtcagctttgggcgggctacagtctggcgtacctggagggacaa
gagaaggctcacacacaggacctgggccaggctggctcctgcctccgcgttttctccacc
atgcctttctcctactgcaacaaagctgcctgtcactactccagtcgcaacgacaaatcc
tattggctgtccaccactgctcccatacccatgatgcccctgttcggccagcacatcagc
cagcacatcagccgctgcgttgtttgtgagacagtttctcccgcagtggcttttcacagc
caggatcagacggttcctgcatgcccacctggctggaggagtctgtggacgggttactct
ttcattctgcacactggggcaggtgataaagggggcggccagtctctgacctcttctgga
agctgccttaaggatttcagaactcatcccttcatagagtgccagggcccacgaggctcc
tgccactacttcaccaacctctacagtttttggctgactactgtgagtcagacagagcag
tttaacgccgcgacgcccgacaccatcaaagcagccgaccaacagcgacgcaaggccagt
cagtgccacgtctgcctcagagaaaaataa
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integrated database retrieval system
