Seriola lalandi dorsalis (Yellowtail amberjack): 111654459
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Entry
111654459 CDS
T06058
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382
Cornified envelope formation
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111654459
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111654459
09142 Cell motility
04820 Cytoskeleton in muscle cells
111654459
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111654459
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111654459
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111654459
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111654459
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111654459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111654459
NCBI-ProteinID:
XP_023261256
LinkDB
All DBs
Position
Unknown
AA seq
1673 aa
AA seq
DB search
MGRPVPVVPLILFAVMLIGTGAKNCGKSRCRFEGVKGSRGDRGFPGDPGPPGAEGRPGSN
GHAGPKGPKGSTGLDGHVGPKGDPGPDGKEGFDGSHGLPGIPGLQGPPGPPGAPGCNGTD
GDDGHPGIHGASGISGNPGPPGLPGLKGESWVLIDLIPGPPGPPGRDGDMGYPGLSGEPG
PLGEVGTRGSPGFPGLPGAPGSKGQEGLYGIPGRRGLKGRSGPPGPPGPPGRTREFSTES
LVLKMQQYMEDLKGDKGDVGEKGCQGDPGDIGYGLYVKGSKGSKGPHGPEGKPGKDGDPG
QYGQEGSPGHSGDPGYQGTPGDTGEKGSRGPPGPPGDIFGPEPLKGYHGDPGSSGPPGPP
GRRGIVGFPGPDGPPGQVSGNYVPGPQGFPGFPGPKGEPGEPGAIYTGLPGLDGDPGDTG
PQGDTGPPGPPEDRTNRITKGLPGMKGMKGTPGDRGYNGTFGKKGEKGEPCYDCIGAGPP
GTPGPRGPPGIPGNNQGPGAKGDLGIPGPTGLTGRPGPVGERGYPGPPGQKGDSYSYSTP
GIKGVTGDPGQLGWPGPDGLPGFPGLPGRKGNQGPPGDLDPYPGGKGDRGFPGPQGPFGR
PGPVGLPGQVGYGPPGLPGSKGDVGVPGLPGEPGIPGQKGEPSHIHTTGPPGPPGFKGLP
GLPGSSGYQGASGAPGIPGFPGQKGERGPVPFAGNQGIQGQKGDKGQPGLKGFPGRGLPG
QPGSPGPPGPPGLKGDGGHGIPGPPGLPGLPGEEGRQGPTGDPGTPGLPGKPGLIGNPGY
PGEKGNKGSIGPPGVPGSKDSCKGLPGPVGPPGPDGYPGPPGPNGLPGVKGNVGLPGSGH
TGPRGEPGSPGTSGLGSLGFPGLKGIKGQNGLPGQPGLRGDPGPEGLPGYGLEGLPGIVG
PPGRIGCPGPQGARGSQGPQGIKGEKGFRGPPGNTSTIPIDIIGPPGDNGNLGDPGPSGV
PGDTGSTGPKGLRGIHGAPGSPGLKGPPGDPGIDGSVFSERRQGPAGTLGDPGVRGPQGL
KGIRGDQGNTGGPGQDGAPGPTGNKGVKGEPNYFGYGIPGPVGQKGEPGSTNTYAMKGQK
GEPGFHGPPGQPGDCGARGNPGPVGRNGAPGHQGPKGSDGPPGVKGLPGPNGPPGVAGLP
GVSGYPGPKGNQGLDGIPGLPGQKGDTIIIGGTPGGRGEPGQPGPPGDPGPTLPVIVSPG
PIGDKGLRGLPGLNGPRGLPGREGACSWLKGDRGHPGSPGNPGCPGLPGPPGPTVPGFKG
DRGNEGLIGSPGNRGPPGDPGPQGLPGVRGKTGSPGPRGDCGPPGFQGPPGEKGDPGYNP
GPPGLPGVKGFPGRPGLKGEPVFAKGIFEPGFPGLPGPPGNRGAPGSTGPSGQPGLPGKP
GVKGVRGPSPLGQPGFPGHKGDKGSAGVPGPEGRLGDAGRKGPPGLPGGGGPHYVDSFLI
ARHSQSIRVPDCPPGSNLIYSGYSLLFIKGNDKAHGQDLGTMGSCLARFSTMPFLFCDTE
TTCRYASRNDYSYWLSTDTPMPINMVSITGEKLASYISRCAVCETTSNVIAFHSQTILIP
QCPEGWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDS
YSYWLASLDAKNMFSKPAPRTVKGPSLQNVISRCRVCRKLWQSRSDDKRGDSF
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccagtgcctgtagttcctctgatcctgtttgctgtgatgctgattggcact
ggagccaaaaattgtggaaaatcaaggtgccgctttgaaggagtgaaaggcagcagggga
gacagaggttttccaggagatccaggtcctccaggagcagagggccgtcctggatcaaat
ggtcatgctgggcctaagggaccaaagggcagcactgggcttgatggacatgtgggacca
aaaggcgatccgggacctgacggcaaagaaggatttgatgggtctcatggtttaccgggt
atcccaggtttacaaggacctccaggccctccaggggccccaggatgcaatggaacagat
ggagatgatggacaccctggaattcatggagccagtggtatttctggaaatccaggtcca
ccaggtctgcctggacttaagggtgaatcttgggtgttaatagatttaataccagggcca
cctggaccacctgggagggacggagacatgggatacccaggtctcagtggagagcctgga
ccattaggcgaagttggaacaaggggctctcctggatttcctggccttccgggggctcca
ggatctaagggtcaagaaggcttatacggtatcccaggacgtcgtggactaaaggggaga
tcgggaccaccagggccaccggggccaccgggtcggaccagggagttttccactgaaagc
cttgttttaaagatgcagcaatacatggaggatctaaaaggagacaaaggagatgtcgga
gaaaaaggctgccagggcgatccaggagatattggttatggcctttacgtcaaaggatca
aagggaagcaaaggacctcatgggccagaaggaaagccagggaaggacggtgatcctgga
caatatggacaggagggaagccctggccacagcggtgatccaggatatcaagggacacca
ggagacacgggtgaaaaaggaagcaggggtccacctggtccacctggagatatatttggg
cctgagccactcaaaggataccacggagatcctggttccagtggccctcctggtcctcct
gggcgtcgaggtattgtggggtttcctggaccagatggacctccaggccaagtgtctggg
aattatgtgccgggcccacaaggtttccctggctttccgggtcccaaaggggagcctggg
gaacctggggctatttatactggactcccaggtctagatggggatcctggtgatacagga
cctcaaggggatacgggcccacctggacctccagaagacagaactaacaggataacaaaa
ggtctcccaggaatgaagggaatgaagggtacacctggagataggggatataatgggaca
tttggaaagaaaggagagaagggggaaccttgttatgactgcattggagcaggaccccca
ggaacaccgggtccccgtggtccacctggcatccctggcaacaatcaaggaccaggtgcc
aaaggtgatctaggcatcccaggacctacaggtttaactggaagaccaggtcctgttggt
gaaagaggatatccaggccctccaggacaaaagggagactcatattcctacagcactcca
gggataaagggagtgacaggagacccagggcagcttggctggcctggtccagatggcctc
cctgggtttcctgggttaccaggtcgtaaaggcaatcaaggccctccaggggatttggat
ccataccctggtgggaagggagaccgtggttttccaggcccacaagggccttttgggaga
ccaggaccagttggcctccctgggcaagttggatatgggccccctggacttccaggaagt
aagggagatgttggggtacctggcctgcctggggagcctggaattccaggccaaaaaggg
gaaccaagccatatccacaccactggacctcctggaccacctggatttaaaggcttgcct
ggtttacctggaagctcaggttatcaaggagcatcaggtgcccctggaataccaggtttt
ccaggacagaaaggagaaagaggtcctgtgccatttgctggaaaccaggggatccaagga
cagaaaggtgacaaagggcagccaggtctcaaaggttttccaggtaggggcttgcctggt
cagccaggttcaccaggccctcctggtcctccaggactgaagggagatggtggccacgga
atccctggccccccaggcctccccgggcttccaggagaagaaggacgtcagggccctaca
ggagatcctgggacccctggtctacctgggaaaccagggctaattggcaaccctggttat
ccaggagaaaaaggaaataaaggttctatagggcccccaggagtacctggtagcaaggat
tcatgtaaaggattacctggaccagtgggaccaccaggaccagatggttatccaggacct
ccaggacctaatggcttgcctggtgtgaaggggaatgtaggtttgccagggtctggtcat
actggcccccgtggtgagcctggctcccctgggacatcaggccttggttcacttgggttt
cctggactaaaagggatcaagggacagaacggcctgcctggtcaaccaggattgagagga
gaccctggaccagaaggattaccaggatatggactagagggattgcctggaattgtggga
ccaccaggccgaataggttgccctggcccacaaggagccagaggttcccagggtccacaa
ggcataaaaggagaaaaaggtttcagaggtcctccaggcaatacatcaacaataccaata
gatattattgggcccccaggagacaatggcaatttgggtgatcctggtccgtccggtgtc
cctggagatactggaagtactggaccaaaagggctgagagggattcacggagcaccaggg
agtcctggactcaaaggtcctccaggggatccaggtattgatggatcagtgttttcagaa
agaaggcaaggacctgctgggaccttaggagacccaggagtgagaggtcctcaaggctta
aaaggaataagaggagatcaaggaaacactggagggccaggtcaagacggtgcaccaggt
ccaactggtaacaaaggagttaagggagaaccaaactactttggatatggaatccctggg
ccagtaggacaaaagggtgaaccaggatcaaccaatacttacgcgatgaagggtcaaaaa
ggagaacctggttttcatggaccaccaggtcaaccaggagactgtggagccagaggaaac
ccaggacctgttggcagaaatggtgcaccaggccaccaagggcctaaaggttcagatgga
cctccaggagtcaaaggactcccgggacctaatggaccaccaggtgtcgcaggtctgccg
ggagtcagtggttatccaggtcctaaaggcaaccagggtctagatgggatccctggacta
ccagggcagaaaggggacacaatcataattggagggacacctggaggacgtggtgaacca
ggtcaaccaggccctcccggggaccctggtcctaccttgccagtcatagtaagtcctgga
ccaataggagacaaaggattgcgaggtctacctgggctcaatggtccaaggggtctacca
ggaagagaaggggcatgttcttggttaaaaggagaccgtggccatcctggcagtcctggt
aacccaggatgtcctggcttacctggccctccaggtcccactgtgcctgggtttaaagga
gacagagggaacgaaggtcttataggaagcccaggcaatagaggacccccgggagatcca
ggccctcaaggactacctggtgtaagaggcaaaactggaagccctgggccaagaggtgat
tgtggtcctcctggattccaagggccccctggtgagaaaggagaccctggatacaaccca
ggcccacctggtctgcctggagtcaaaggttttcctggacgacctggcctcaaaggtgaa
ccagtatttgccaagggcatatttgaaccaggctttcctggcttaccaggtccccctggc
aatcgaggagccccagggagcactggaccatcaggacaaccaggccttccaggtaagcca
ggtgtcaaaggagtgcgtggtcccagtccactcggccagcccggatttcctggccacaaa
ggagacaaaggaagcgcaggagtgccaggtccagaaggtagacttggagacgcaggccga
aagggtcctccagggctgcctggaggaggcggtccacattatgttgacagtttcctgata
gctagacacagtcaaagcatccgtgtccctgactgccctcctggctccaacctcatctac
tctggttactcgcttcttttcatcaaaggaaatgataaagctcatggtcaggaccttggc
accatgggaagctgtctcgctcgcttctccaccatgcccttcctgttctgtgacacagaa
actacctgtcgctatgcttctcgtaatgactactcatactggttgtcaacagacacccct
atgcccattaacatggtttccatcacaggagaaaagctggcctcctacatcagcaggtgt
gcagtgtgtgaaaccacctccaatgtcatagccttccacagccagacaattctgatacct
caatgtcccgaaggttgggagtccctgtggactggatactcatttgttatgcaaacaggt
gctggtgcagagggctcctcgcagcctctggtttctcctggctcatgtctggaaagtttc
cgccaagtgcccttcattgaatgtcacggcaggggaacatgtaactactaccctgattcc
tatagctactggctggcctccctcgatgccaaaaacatgttcagtaaacctgctcctcgg
acagtgaagggaccttctctacaaaatgtaatcagccgttgtcgggtctgtaggaaacta
tggcagtctcgctcagatgacaagcgtggggacagtttttaa
DBGET
integrated database retrieval system
