Seriola lalandi dorsalis (Yellowtail amberjack): 111654545
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Entry
111654545 CDS
T06058
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04518
Integrin signaling
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111654545
04518 Integrin signaling
111654545
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111654545
09142 Cell motility
04820 Cytoskeleton in muscle cells
111654545
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
slal00535
]
111654545
Proteoglycans [BR:
slal00535
]
Extracellular matrix (ECM) proteoglycans
Others
111654545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
111654545
NCBI-ProteinID:
XP_023261373
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MAFRYSGLTREHPSMSAYFPVCTALLSLLLAPALGQLDLNRLDGDTVCPPMRSGQDDLPG
FDLITQFQLDVIPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFMATF
RMIKNTVNKVWNVWQVVDEDGNKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSVLFN
TKWHKVMIGVERDQVTLYVDCQPVDQKPIKGKGPINTEGDTLIGRLDADPDASVVFELQW
MLIHCDPKRAQRESCNELPATEMYANAEPDKSVQGPPGAPGPEGPRGPSGENGRDGRDGL
PGSPGSPGSPGSKGEQGEIGLPGQRGLPGLPGVAGTPGPMGPRGSVGERGLPGFPGPAGP
PGPASEGPAGKPGKPGIPGDEGNIGPEGAPGPRGTPGTAGLPGPPGPPGPVGPPGASNEG
SGEACPAACPAGPQGMAGLPGMKGHKGLAGEPGKDGVPGDKGDTGTPGAQGPPGRMGDDG
QRGPIGFPGAEGEKGDRGGPGFNGVPGPTGPPGAPGVEGIRGRQGLQGPKGDDGAVGPQG
EQGPQGEKGDVGEPGADGLDGLPGTDGAKGEPGTPGAGGVRGIVGIPGLPGKQGVVGPPG
AKGDSGAEGPIGPVGLPGKTGETGKDGEDGKSGVKGATGETGKQGPVGPAGPAGIQGDKG
DKGDTGAKGFKGHTGHKGDQGPMGPMGPKGSLGDTGMAGDPGVKGDQGPPGVTGLKGERG
DKGSRGAAGIDGRPGQTGHEGLAGPMGARGLEGETGLPGAPGPRGLPGPKVSDEKLREMC
SAVVEEQLAELKKELLKTPAALGAPGIPGPAGPPGPPGAAGAAGATGAPGLMGPKGPPGF
FGIPGGPGKKGDAGEKGDKGDKGEDGVGVKGSPGAPGAPGEPGAPGIGKDGKNGERGDAG
NPGIPGAAGPRGPSGPPGLCDPSTCIGRIPPLYMVSGKKSASYKNP
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggccttccgctactctggtttgacgagagagcatccatcgatgtcggcgtacttccct
gtctgtacggctctgctgtccctcctcctcgctccggcactcggacaactcgacctgaac
cggctggacggtgataccgtctgcccgccgatgagaagcggacaagatgaccttccaggt
tttgatctgatcacccagttccagctggacgtgatccccctgaaaggtgtgaggaaggtg
gacggctccacccccctccaggtggcttaccgcctcgacagggaggccaacttccaaatt
ccaaccatgctaaactttcctcgtggcttcccggacgagtactccttcatggcgaccttt
cgcatgatcaagaacacggtgaacaaggtgtggaacgtctggcaagtagtggacgaagac
ggcaacaaacaagccggactgaggctgaatggcgaccagcaggccctggagtacttcctg
atgggtgccgacggcaacctgcagaccgtcaccttccccggcctctctgtgctcttcaac
accaagtggcacaaggtgatgatcggcgtggagcgcgaccaggtcactctgtatgtggac
tgccagcccgtggaccagaaacccatcaagggcaaaggccccatcaacacagagggagac
actctcattggcaggctggatgctgatcctgacgcctctgtagtgttcgagctccagtgg
atgttgattcactgcgacccaaagagagcccagagagagagctgcaacgagctgccggcc
actgagatgtatgccaatgctgagcctgacaaatcagtccaaggccccccaggagccccc
ggtccagagggccccagagggccctcaggagaaaatggcagagatggaagagatggtctt
ccagggtctcctggcagtccgggatcacctggcagcaaaggggagcagggggagatcggt
cttcctggacagagaggcctgcctggtcttccaggagttgctgggactccaggcccaatg
ggtccccgagggtctgtaggagagagaggtcttcctggttttcctggacccgcaggtcct
cctggaccagcgagtgaaggacccgctggaaaaccagggaaaccaggaatcccaggagac
gaaggaaacatcgggcctgagggtgcacctggacccagagggacccccggcacggcagga
cttcctggtccacctggtccaccagggcctgtgggaccgcctggtgccagcaatgaggga
agtggggaagcttgtcctgccgcctgccctgctggacctcagggaatggctggactgccg
gggatgaagggtcacaaaggtttggctggtgagcctggaaaagatggagttcccggagac
aagggagacacagggacaccaggtgctcaggggccaccgggtcgcatgggagatgatggt
caaagagggccaattggattccctggagctgagggagagaagggagacagaggtggtcct
ggtttcaatggcgtcccaggacccacgggcccacctggagctcctggtgtggagggaatc
cgtggacgtcagggtctgcaggggcccaagggtgacgatggagctgtgggacctcaagga
gagcagggacctcagggagagaaaggagatgtgggggagccaggtgcagacggcttggat
ggacttcctggaactgatggtgctaagggagagcctggtacacctggagctggcggtgtc
agggggattgtgggtattccaggcctgccggggaagcagggagtcgtcggaccccctggt
gcaaagggtgatagtggtgcggagggacccatcgggccagttggacttcctgggaagact
ggtgagactggaaaagatggagaagatggaaaatcaggagttaaaggagcaacgggtgaa
acaggaaaacaggggccggtggggcccgcaggtcccgcaggcatccagggtgataaagga
gataaaggtgacaccggtgccaaaggattcaagggtcacactggacacaaaggtgatcag
ggacctatgggaccaatgggaccaaaaggaagtctgggcgacacgggaatggcgggagat
cccggcgtgaagggagaccagggtcctcctggtgttactggactcaaaggagagcgtgga
gacaagggctcaagaggagcagcgggcatcgatggcagaccgggccagacgggacacgaa
ggtttggccgggccgatgggagctcgagggctggagggagaaacaggcctccccggagcg
ccaggtcccagaggtctacctggcccgaaagtgagtgacgagaagcttcgggaaatgtgc
tcagccgttgtggaagaacaattagcagagttaaagaaagagctgctgaagacgccagca
gcccttggtgcccctggcatccctggaccggcaggacctcctggcccccctggagcagct
ggagcagcaggagcaacaggagctccagggctgatgggacccaaaggcccaccgggcttc
ttcggaattccaggcggaccgggcaagaaaggtgatgctggggagaagggagacaaggga
gacaagggagaggacggcgtaggtgtcaaaggaagcccaggtgcacccggtgcaccaggt
gaaccaggcgcccccggcattggcaaagacggcaaaaatggcgaacgtggtgacgcagga
aatcccggtatcccaggagcagccggtccaaggggaccctcaggaccaccgggcctttgt
gacccatcaacctgtataggccgaatcccacctctctatatggtcagcggaaagaaatcc
gccagctacaagaacccgtga
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