Seriola lalandi dorsalis (Yellowtail amberjack): 111654994
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Entry
111654994 CDS
T06058
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111654994
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111654994
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111654994
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111654994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
111654994
NCBI-ProteinID:
XP_023261974
Ensembl:
ENSSLDG00000009047
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEDIKECANPIFPSGECCPICPADASAPIETVGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGAMG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG
PHGPTGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKPGEKGLVGRPGLRGLSGKDGETGASGPPGPAGPAGERGEQGQPG
PSGFQGLPGPAGSPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGSQGLQGPRG
LPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEGAPG
KDGSRGLTGPIGPPGPSGPNGAKGETGPSGPSGAPGTRGAPGDRGEGGPPGPAGFAGPPG
ADGQPGAKGELGEGGQKGEAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGPAGKDGPKGARGDAGVPGRQGDAGLRGPPGQQGEKGEAG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSGGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAVGAKGERGNTGPSGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPGGPPGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGAAGPAGPSGAKGPPGPAGPAGKDGSNGQLGPIGPPGPRGRSGETGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETG
ETCVYPNIAKVPQKNWWTSKSKDRKHIWFGETMNGGFHFDYAQDGPAANAASVQLTFLRL
LSTEASQNLTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKK
HTDRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaggaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggatatcaaagagtgtgccaac
cctatcttcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacagttggtgctaagggccagaaaggtgaacccggagagattgcagatgttgtagga
ccaaaaggaccacctggccctatgggacccccaggtgagcagggaacacgcggagaagct
ggcgctaagggtgataagggaaatcctggacctcgaggaagagatggtgagcctggcacc
cccggaaaccccggcccagctggaccacctgggccaccaggtcttggagggaactttgct
gctcagatggctggaggttttgacgaaaaggccggaggcgctcagatgggtgtgatgcaa
ggaccaatgggtcctatgggtcctcgtggtccccctggaccttctggagctcctgggcca
cagggtttccaaggttcccctggagaggctggagagcctggtccagctggagcaatggga
cctcgtggaccacctggaccttctggaaaaccaggaagtgatggtgaggctggcaaacct
ggcaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagctaaagga
gagactggtgctgcaggagccaagggtgagggtggtgcccctggtgagaatggtgctcct
ggacccatgggcccacgtggtctgcctggtgagaggggacgtcctggagctgctggagct
gcaggtgcccgtggaaatgatggcctgcctggtcctgctggtccacctgggcctgttggt
cctgctggagctcccggtttcccaggatccccaggagccaagggagaagctggccctact
ggcgcccgtggagctgaaggtgcacagggaccacgcggagaggctggtaccccaggatct
cccggacccgccggagcatcgggtaaccccggtactgatggtattcctggagctaaggga
tctgctggtgctcctggtattgctggtgcccctggattccccggcccccgtggcccacct
ggaccacagggagccaccggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggacccaaaggagagcttggccctgctggtccacaaggt
ccccatggcccaactggtgaagaaggaaagagaggcgccagaggagagcctggagctgct
ggaccacttggacctccaggagagagaggagctcctggtaaccgtggattccctggtcag
gatggtcttgctggtgctaagggtgcccccggtgaccgtggtgttcctggtgctgctggc
cctaaaggtgctactggagaccctggacgcacaggagagtctggccttcccggagccaga
ggtcttactggtcgtcccggagatgctggtcctcagggcaaagttggaccctctggtgct
gctggtgaggacggtcgccccggcccacctggtcctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaagctggaaagccaggagagaag
ggtcttgtgggtcgtcctggtctgagaggtctgtctggaaaagatggtgagactggtgct
agtggacctcctggccctgctggacctgctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctgcctggacccgctggttcccctggagaggctggaaaacct
ggagatcaaggtgttcctggagagggcggagctcctggtgctgttggacctagaggagaa
cgtggattccctggtgagcgcggtggtgctggatctcagggtcttcagggaccccgtgga
cttcctggaacacctggatctgatggacccaagggagccattggaccagctggtgctgct
ggacctcagggaccccccggcctgcagggtatgcctggagagagaggaactggtggcatc
ccaggacctaagggagacagaggtgacaatggacagaagggacccgagggtgctcctgga
aaggatggctccagaggtttgactggtcctattggtcctcctggcccatctggacccaac
ggtgccaagggtgagactggacctagtggaccttctggtgctcctggtactcgcggtgct
cctggtgaccgtggtgagggcggtcctcctggacctgctggctttgctggacctcctggt
gcagatggtcagcccggtgccaagggagagcttggtgagggtggacagaagggagaggct
ggtgctcctggaccccagggaccatcaggggctcctggacctgtgggacctactggtgta
tctggacctaaaggagctcgtggtgctcagggagctcctggtgccactggtttccctggt
gctgctggcagagttggacctcctggccctaatggtaaccctggtgctgctggtcctgct
ggtcctgctggtaaagacggaccaaagggtgctcgtggtgacgctggtgtcccaggaaga
cagggagacgctgggcttcgtggacctcctggacaacaaggagagaagggagaggctgga
gaggatggaccacctggtgctgatggaccttcaggtcctcagggtctggctggatcccgt
ggtattgttggtttgcccggtcagcgtggagagagaggcttccctggtctccctggacct
tctggagagcctggcaaacagggagctcctggttctggtggcgaccgtggacctcctgga
cctgtgggaccccctggacttactggaccagctggagagactggtagagagggtacccca
ggatcagatggacctcctggtagggacggagctgttggagccaagggagagcgaggtaac
actgggccttctggcgcccctggagctcccggtgcccctggtgcccccggacccgttgga
cccctcggcaagcagggagacagaggagagtctggtgctcaaggacctggaggaccccct
ggacccgctggtgctagaggaatggctggtccccaaggaccacgtggagacaagggagag
gctggtgagactggagagaggggacagaagggtcaccgtggattcactggtctgcagggt
cttcctggacctcctggtcccgctggagattctggagctgctggacctgcaggaccaagc
ggtgccaagggaccacctggaccagctggacctgctggcaaagatggatctaatggacag
cttggccctattggacctcctggacctcgtggacgctctggagagactggtcctgctggt
cctcctggtaacgctggaccccctggtcctcctggtcctcccggccccggcatcgacatg
tctgccttcgccggtctgggtcagactgagaagtcccccgatcctctcaggtacatgagg
gctgatgaggcctccagctccctgaggcagcacgacgtcgaggttgattctacactcaag
tccctcaacaaccagattgagaacctgcgcagccccgacggctcccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtgactactgggtt
gaccccaacattggcagcacagccgatgccatcaaggtcttctgcaacatggagactgga
gagacctgcgtctacccgaacatcgccaaggtaccacagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagagaccatgaatggaggattccacttcgac
tacgctcaggatggacctgctgccaacgctgccagcgtccagctgaccttcttgaggctt
ctgtccactgaggcatcccagaacctcacttaccactgcaagaacagcattgcctacatg
gaccagaccacaggcaacctgaagaaggctttgctgctgcagggctccaacgatgtggag
atccgtgcagagggcaacagtcgcttcacatacagcgtgttggaggatggctgcaagaaa
cacacagaccgatggggcaagactgtctttgagtacaaaacacagaagacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagtttggcgtggat
gtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
