Seriola lalandi dorsalis (Yellowtail amberjack): 111655249
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Entry
111655249 CDS
T06058
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111655249 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slal03400
]
111655249 (msh2)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111655249 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
111655249
NCBI-ProteinID:
XP_023262348
Ensembl:
ENSSLDG00000017228
UniProt:
A0A3B4Y232
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDATFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHEWKIEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRFSTGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQLSPKECLLAQGDGNADGNKLREVVERGGMLVSDRKRAEFSSKDMVQDL
NRLLRAKKGETVASNTLPELDKQVAMSCLAAVVRFLELLSDEANFNSFSLTSLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALITAL
ERYSGSCQVLLEAVFLSPLRDLLNDFTKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQAVLNSAARELGLDPGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
MDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSMIDSILARVGAGDCQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLFA
THFHELTALAAQQPTVQNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPAVV
AMAKEKAEELEEFQDPAGQKLDKEEEPEAKRRRTDKQVGENLIQDFLEKAKSLPAATMSE
EEVKAELRRMKQELATKNNTYVTEILARCVPVKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctttcaatggatagtgcagccgagcatggctttcta
aacttcattttctccatgccggagaagccagacaccactttcagaatattcgaccgtaac
gactactacactgttcacgggaaagacgccacattcgcggcgaaagaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagctggagagtgtagtcctgagc
aagctgaattttgaggcctttgttaaagacttgctgctggtgaggcagtacagagtagaa
gtgtacaggaaccacagcaagagcagcaaggagcatgaatggaagatcgagtacaaggcc
tctccaggaaacttgacccagtttgaggagattttgttcggcggaggaaccggcgcagag
ggctgtgcaggtgttgtagccgtgcgcttttctacaggagctgatggacaacgcgtggtt
ggggtcggctacgtggacgccgcccagaggacgatgggagtgtgcgagtttccagacaac
gagatcttctccaacctggagtccctgcttgttcaactcagccctaaagagtgtctctta
gcccagggtgacggcaacgctgacggcaataaactacgagaggtagtggagcgcggtggc
atgctggtctctgacaggaagagggcagagttcagtagcaaggacatggtccaggatctc
aacaggctgctgagagccaagaaaggagagacagtggccagcaacactctgcctgagctg
gacaaacaggtggctatgtcatgcttggctgcagtggtgcgtttccttgaactgctctct
gatgaggccaacttcaactctttcagtctgacctctctggacctgggtcagtacatgagg
ctggacaacgcagccgtgcgggctcttaacctcttccagggttcacctgacgacacaagc
ggagctcattcattggctggtctgttgaacaagtgccgtacgccgcagggtcagcgactg
gtcaaccagtggatcaaacaaccactcatggacaaaaccaaaatagaggagaggctggac
ctggtggagagcttcgtgtgcgactctgagctcaggcagacctgccaggaggacttgctg
cggcggttccctgatcttcaccgtctggccaagaagttccaccgtcacacagcgacgctg
caggactgctacagggtctaccaggccgtgagccatatccctgccctcatcacagcattg
gagagatactcgggtagctgccaggttctgttggaggcagtgttcctgtctcctctcaga
gacctgctgaatgacttcaccaagtatcaggagatgattgaaaccactctggacatgaac
cagatcgaccaccacgaattcctggtgaaggcgtcgtttgatccggtgttgagtgagctg
agagaaaagatggacgcgctggaaaagagcatgcaggcggtgctgaacagtgctgccaga
gaactaggtctggatcctggcaagacggtgaagctggagtcgaacgccgtgctgggtttt
tacctgagagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacg
ctggacgttcagaagaatggagtgcgtttcacaaacagtaagctgagttctctgaatgag
gagtacaccaagagcagggaggagtacgaggaggcgcagaatgctatcgtcaaagaaatc
atcaacattgcctcaggttacgtggaccccctccagactctgagcgacgtaatagcgcag
atggacgcagtggcgagttttgcagtggcgtccgtctccgctcccgtgccgtacgtccgg
cctcgcctcttagccgacggctgcaggcgtatggagctgctgcaggccagacatccctgc
atggagacagacgcagacaccgccttcataccaaacgacatcaccttcgtccagggagaa
aagagtttctatattatcacaggaccaaatatgggtggcaagtcgacatttatccgtcag
gtgggtgtgatcgctctgatggctcagatcggctgctttgtgccatgcgagaaggcggag
cttagcatgattgacagcatcctggccagggtgggagcaggagactgccaggtgaaaggc
gtgtccacctttatgtcggagatgctggagaccgccgccattctacgctcggccacggag
aactcgctcatcatcatcgatgagctcggcagaggcacgtccacgtacgacggcttcggt
ctggcctgggccatcagtgaacacatcgcctccaaaatcggcagcttctgcctgttcgcc
acacacttccacgagctgacggcgctggcggcgcagcagcccactgtgcaaaacctgcat
gtcacggccctgacctcccacaacacactcaccatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttggtatccacgttgccgagttggcttgtttcccgccagcggttgtt
gccatggcgaaggagaaggcggaggagcttgaggagttccaggatcctgcaggacagaag
ttggacaaggaggaagagccagaggccaagagacgacggacagacaaacaagtgggggaa
aacctgatccaggacttcctggagaaagcgaagtcacttcctgctgccaccatgagcgag
gaggaggtgaaggcagagctcaggaggatgaagcaggagctggccaccaaaaataacacg
tatgtcacagagatcctcgcacgctgtgttcctgtaaaaacagcttga
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