Seriola lalandi dorsalis (Yellowtail amberjack): 111655675
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Entry
111655675 CDS
T06058
Symbol
dhx16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111655675 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slal03041
]
111655675 (dhx16)
Enzymes [BR:
slal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111655675 (dhx16)
Spliceosome [BR:
slal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111655675 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
111655675
NCBI-ProteinID:
XP_023262925
Ensembl:
ENSSLDG00000012742
UniProt:
A0A3B4XIM8
LinkDB
All DBs
Position
Unknown
AA seq
1048 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVSQFMIGTARKALNAQDFVSRLEQTGTIDIDQSVIAFA
QELFDKIPRKQVVEKPSRAIEREAIEMDKKNRTYTLLEDSDSDEDTVQEKQKGKKKSKDK
GNKRKHIRRKKESESSSEDDAPKRSNSAQLVKKDEEEEEEWEKEERERLQDIEERDAFAE
RVRQKDKDKTRNITERTDKKAYEEAQKRLKMAEEDQNNMLPELRKRSRWEYLKKREAEKL
EDLEAEIIDDEYLFSTDELTERERKELEYKRTLRDLAKDYKKAGAKEQEERKNRYYMPEE
KRSKEVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKKEREQGMRKEQERYQLIL
EEEEMIDFVSTAITMKGTRTDKDQEAPALSQAELKKQSMQEVRRSLPIFPYREDLLAAIQ
EHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVAARVAQEMSVKL
GNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILF
GLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYLE
ACVVSVLQIHVTQSPGDVLVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYANLPS
DMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTP
CSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLGIN
DLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEQ
YKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWLESGF
STQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDNVPIRKAVTAGYFYHTAR
LSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVAP
HYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagagcagtgggttagtgaccgtctccatgacatcctcgggttgagtgac
agatatgtgtcccagttcatgattggtactgcacggaaagctttgaatgcacaagacttt
gtgtctcgccttgagcagacgggcacaattgacatcgaccagagtgtgattgccttcgca
caagagctctttgacaagattcctcgcaagcaggttgttgagaagccatcccgtgcgata
gagcgagaagccattgaaatggataagaaaaatcggacgtacacgttactggaggacagc
gacagtgatgaagacactgtgcaggagaaacagaaagggaaaaagaaaagcaaggacaaa
ggaaacaagaggaagcacatcagacggaagaaagagagcgagtcgtctagtgaggatgac
gcacctaaacggagtaattcagcccagttagtaaagaaagatgaggaggaagaggaagag
tgggagaaggaggagcgagagcgactgcaggacattgaagagagagacgcgtttgccgag
cgagtgaggcagaaagacaaagacaagacccgcaacataacagagaggactgacaaaaag
gcttatgaggaagctcagaagaggctgaagatggctgaagaggatcagaacaacatgttg
ccagagttgaggaagcgctctcgctgggagtatctaaagaagagagaggcagagaagctg
gaggacctggaggcggagatcatagacgacgagtatcttttctctactgacgagctgact
gagagggagagaaaggagttggaatacaaacgcacccttcgggacctggctaaagattac
aaaaaggccggtgccaaggaacaagaggagaggaagaacagatactatatgccagaagag
aagagaagcaaggaggtgccccagagagacctggagctggaggaaactcccatggagctg
ggaggagagcaaggccgctgggaggaggagaggttgaaaacagcctccctcagcttcggg
gccaagaaggagcgagagcaagggatgaggaaggaacaggagaggtaccagctgatcctg
gaggaggaggagatgatcgactttgtcagcactgccattaccatgaagggaactcggaca
gataaggatcaggaggccccggctctgtcgcaggcggagctgaagaaacagtccatgcag
gaggtccgacgcagccttcccatcttcccctacagagaggacctgctagctgccatccag
gagcaccagatcctggtcattgaaggggagacgggctccggaaaaaccacccagatccca
cagtacctcctggaagatggatacactaaaggaggcatgaagatcggttgcacacagcct
cgcagagtggcagccatgtcagttgcagccagagtggcacaggaaatgagcgtcaagctt
gggaacgaggtgggttacagcattcgttttgaggactgcacatcagagagaacggtgctc
aagtacatgacagacggcatgctgctccgagagtttctcaccgagcccgacctggccagc
tacagtgtgatcatcatagatgaggcccatgagcgaacgctccacacagacatcctgttt
ggtctgattaaggacattgccaggttcagaccagacctgaaggtgctggtggcgagcgct
actctggacaccgagcgcttctcctgcttttttgacgacgctcctgtcttcaggatcccc
ggcaggaggttcccagtcgacatcttctacactaaagctccagaggcagactacctggaa
gcgtgtgttgtgtcagtgctacagatccacgtcacccagtctcctggagatgttctggtc
ttcctcactggacaggaggagatcgaagcgtgttgcgagctgctccaggagagatgcagg
cggctgggctctaagatcgcagagctgctggtccttcccatctatgccaacctgccgtcc
gacatgcaggcgaagatcttcaaccccactccgcctggggcccgtaaggtggtggttgct
accaatatagcagaaacctccctcaccatagatggaatcatctacgtcatcgatccaggc
ttttgcaagcagaagagttacaacgcccgcaccggcatggagtcactcattgtcacgccc
tgctcacgggcttcggccaaccagagagcaggccgtgcaggcagagtggctgctgggaaa
tgttttaggctttacacagcctgggcctttaaacatgagatggaagaaacgaccgtgcct
gagattcagaggaccaatttgggaaatgtagtcctgctgctgaagagtctaggcatcaat
gacctcattcactttgacttcatggacccaccccctcatgagactctggtcttagcgctg
gagcagctctacgccctgggagcactcaaccacctgggagagctcacaaagctgggtcgc
aggatggctgagttacctgtggaccccatgctgagcaagatgatcctggcgtccgagcag
tacaagtgttcagaggaagtgttgacaatagcagccatgctgtcggtgaacaactctatt
ttctaccggcccaaagacaaagtggtgcacgccgacaacgccaggatgaactttgtggtg
ccagggggagaccacttggtgctgctcaacgtctacacacagtggctggagagcggcttc
tccacacagtggtgctacgagaacttcatccagtttcgctccatgagaagagcccgggac
gtccgggaccagctggagggtctgatggatcgcatagaggtggaggtggtcagctcccag
ggagacaatgtgcccattcgcaaggcggtgactgcaggatatttctatcacacggcacga
ctgagcaaaggcggctacaagacggtgaagcaccagcagacggtctacgtccaccccaac
agctctctgttcgaggagcagccccgctggctcatctaccacgagctggtcttcaccact
aaggagttcatgagacaggtgattgagatagacagcggctggctgcttgaagtcgctcct
cactactacaaaagcaaagagctggaggacagcagcagcaagaagatgccccgcaagcag
ggtaaaactaaagaagagctgggctga
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integrated database retrieval system
