Seriola lalandi dorsalis (Yellowtail amberjack): 111655729
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Entry
111655729 CDS
T06058
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111655729 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111655729 (edc4)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111655729 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
111655729 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EDC4L
RMC1_N
Motif
Other DBs
NCBI-GeneID:
111655729
NCBI-ProteinID:
XP_023262993
Ensembl:
ENSSLDG00000013767
UniProt:
A0A3B4XHN6
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNGTDAQSSDVERKPSFNGELNGLLGTAGILGNTD
RSTMSDSTRPISTDISTAQESQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKFDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLAFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVVHIKRPEDTPLNSHRRLIW
CPFILDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPIDATDLKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSALPSLKASLDLS
AEYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEV
LPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPTMGSSSAVFLPHSD
SQDGFAGFSDHLTDQSSDKDSGSGSQTDLRKIPSLPAPADFLSNSTPGSGPMPKLMTPDA
FMTPSTSVPASPGSSASSLTIVTAISSNSDSTNRAIDDVSQSPNRAENNSSSSLTLSAST
SSPRAATAVLLPGLENLQPLASPSGPLALDSSQVLDSPLLPPLASPTRARSPDVISSAST
AMSQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNGLLPL
ELGGADGPVGGAVESEPRLSHTPSLLENALSQENPGVGGGSSDGSVSHTPWPAAPDITRE
TRNSLRDNGLGDCSREESNDRLLSSPYHRRSYHLTQSDSQDAGAEQSDPDDEVASLASSS
GNCGSRSSHRLPVKDWKSSPRGSPKLKRKAKKDDSESSQSRQMDSGQMNVEVQDELLMLL
RSQQRELTELRGQIEAMQSSIMAQVEHVLTNHQEQEQRRLERVLAESQNHQQQLQEQLSQ
QLGHALSSALTNRMDKVLREEMKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLKDNV
TKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGT
QEYIQQLETHMKNRKQREQETRDPMIGQLQQMIDSFQSSSDQMANNITANVRGEIQHQIQ
MMVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQ
ANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQL
SSNLATRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLSKRA
RRLMMMLQGLVNH
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactctaatatagatatcgagggtgcgacccagcatctccgggatatcctc
aagctcgaccgtcccggcaacggcaccgatgcacaatcaagtgacgttgagagaaagcca
tcttttaatggagagttgaacggtttattgggaacagcaggcattctaggaaacactgat
cggtcaaccatgtcagactctactagacccatctccacagacatcagcactgctcaggag
agtcagataatctgcctttctggtgatgatgggtccacctgtatccccatcacctcgaac
aatgtggagattgtagcgagtcaagactccagcatcaacagcaaggctcgagggagcaac
aaggtgaagattcaaccagttgccaagtttgactgggaacacaagtattattatgggaga
ctgatagctgtgtccaactccttcctggcctacgccatcagaggagccaacaaccacgca
atgattcgcgtcctgagtctggcttttgctgagcgctccttactgaaaggattcactggg
gccgtcacagatctggcttttgcccaccttgactcctccctgttgggttgtgtagatgaa
gcgggcaacttaatggtctggcaactcacctgcactggaaacaagatactagatcagata
gtggttcacatcaaacgaccagaagacactccactgaactcccatcgtcgcctcatctgg
tgtccattcatcttggatgacaacgaggagaaccaggatgacaccagccagaccttggcc
cttctacacgaagacagggctgaggtgtgggacctggaagtgttgagagccaacaacagc
agttggcctattgatgccacggacctgaaggaaggcctaatcacagtaaaaggacatacc
cagcgagtcagtgaaggggccttgtctccagatggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatatatagaaggtgtacaggacaagcccagatgt
ctccatgaattgcggcctcatgggggacgacccctctcttgccttcttttctgtgacaac
cacaagaggcaggacccagaggttcctttctggcggttcctcataactggagcagatcag
aaccaggagttgaagatgtggtgcactgtttcctggacctgtttacagaccatcaggttc
tctccagatccgttcaactcatcagctctgccaagtctgaaggctagtctggacctctct
gctgagtatctcatcctcaccgacgtacagaggaaggttctgtatgtgatggagctgcgg
caggatctggaaaaagggaaggccagtttcacagctgtgtcagagttcctgctgacccac
cctgtgctcagcttcggggtccgggatgtcacccacagccgactgcgacacactgaggtt
ctccctgcagaggaggagagtgagagcatgaccacagagggcactcaaggacccacagag
tccaagtctgggatccagattaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcagcccactatggggtccagctctgcagtcttcctgcctcattctgat
tctcaggatggttttgcagggttttcagaccatctcactgaccagagctctgacaaggac
tcaggaagtggctcacagaccgacctaaggaagatcccatctcttcctgctcctgctgat
ttcctgtcgaactctacccctggcagtgggccgatgcccaagctgatgactcctgacgcc
ttcatgacaccaagcacttcggtaccggcatctcctggcagcagtgccagcagtctgacc
attgtaacagctatcagcagcaattctgactcaactaacagagctatagatgatgtcagt
cagagtcctaacagagcagagaacaacagcagcagtagtctgacactctctgcctccacc
agcagccccagagctgccactgctgtgctgctgccgggtctggagaacctacagcctttg
gcgtcccctagcggtcctcttgcacttgacagctctcaggtcttggactctcccctccta
ccaccactggcctctccaaccagggcccgctcccctgatgtcatctcctcagcctccaca
gccatgtcccaggacatgccagagattgcatcccagaccctgcagcttcagcgtggatta
gtgtccagcttggagcccctaccactgtctgctctccagacagacagcatggcctctgct
gcctctgcactgcacctgctcacgtcaccacgcacagccaacaacggcctgttgcccctc
gaacttggaggggcagatggaccagtgggtggggcagtagagtcagagcccagactcagc
cacaccccatctttactggagaatgccttatcgcaggagaaccctggggtaggaggaggg
tcttcagatggtagtgttagccacacaccttggccagctgcacctgacatcaccagagaa
accaggaacagcctcagggacaatggtcttggagactgttcaagagaggagtcaaatgac
agactcttgagttcaccttaccatcggcgctcctatcacctcacacagagcgacagtcag
gacgctggtgcagagcagagcgaccccgatgatgaggtggccagcttggcatcgtcctcg
gggaactgtggctctcgctcttctcacagactccctgttaaggactggaagtcttctccg
cgaggctcgccaaaactaaagaggaaggccaaaaaagatgacagtgaatcatctcagtcc
aggcaaatggactctggtcagatgaacgtagaagtacaggacgagttattgatgctcctg
cgtagccagcagagagagttgactgaactgcgtggacaaattgaagccatgcagagctcc
attatggcccaggtcgagcacgtcctgaccaaccaccaggaacaggaacagcgcagactg
gagcgagttctggcagagagtcagaatcatcagcagcagcttcaggagcagctcagccag
cagctcggccacgccctcagctcagccctcaccaacagaatggacaaagtgctgcgagag
gaaatgaagaaaacagtcccacaaacgatctccaagagcctggagcctgtgacgggtcag
ctgagcaacacaattgctgccaagctgactgctgtggaggtcaccctaaaggacaatgtc
accaaggtggtcaaatccaagaacacaacagatgcaattggccgagcagcagctgaagcg
atgcaggggcccatccaggcagcctataaagatgccttccagagcatcgtgctgcctgtt
tttgagagaggctgccagtccatgttccagcaaatcaatgacagcttcaaacaaggaaca
caagaatacatccagcagcttgagactcatatgaagaacagaaagcagagagagcaggag
acacgagaccccatgattggccagctccaacagatgattgacagcttccaaagctccagt
gatcagatggccaataatatcacagcaaacgtccggggagagatccagcaccagatccag
atgatggtgggaaatttgcaggagtctattcttagccacgtgcaacgaattgtcaaaggg
gaggtgagtctggcaatgaaggagcagcaggcagtggtcacctccagcatcatgcaggca
atgaggtcagcggctggcacacccgtccccacagcacacctagactaccagacacagcag
gccaacatcctgcagctcctccagcagggccagcttaaccaggctttccagcaggctctg
tcagcaacagatctgaacttggtgttgtatgtgtgcgagaccattgactctcagcaggtg
tttggtcagcacccctgccctctcagccagcccgtgctgctgtcgctcatccagcagctc
tcctccaacctcgcaacccgctctgagcttaaaatcagttacctggaggatgcagtgatg
aatctggaccacggcgacccgctgacaagagaccacatgtcctccgtgctggcccaggtc
agaccgaagctctttgccttcctgcagcaggacccccacagcctgctcagcaagagggcg
cggcgcctgatgatgatgctgcagggtcttgtcaaccactag
DBGET
integrated database retrieval system
