Seriola lalandi dorsalis (Yellowtail amberjack): 111657068
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Entry
111657068 CDS
T06058
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase Pl10
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
111657068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111657068
03041 Spliceosome [BR:
slal03041
]
111657068
03036 Chromosome and associated proteins [BR:
slal03036
]
111657068
Enzymes [BR:
slal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111657068
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111657068
mRNA cycle factors
Common to processing body (P body) and stress granule
111657068
Spliceosome [BR:
slal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111657068
Chromosome and associated proteins [BR:
slal03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111657068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
111657068
NCBI-ProteinID:
XP_023264809
Ensembl:
ENSSLDG00000018297
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSDGQGGGTGRRYIPPHLRNKDASKNAGNAYSAGRQCGY
SVAPVNLFSFKQCPQPWQAECQQRHRNNYTSGWDDCKIGNYSVKSSPTLILHEPVIMGES
FYSLLPYLCSGYPRLASQELAFYHAYSGGWRNRCASSSACTDNSVASDGNDDTASVQSWA
DRCDSPGWDGGRSNGFVNGYHDNRSNGSFGGRGPPRNDRGGRGAYRGNRGGGSFNQPLQN
AGFGNYENKDGNWGGAPRDAAYNSFGGRNDRSKSTFFNDRGAGSRGRYERGGFAGGGNSR
WVEDSRDDDWSKPTAPNERLEHELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVD
MGEIVMGNITLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTEG
PGDALQAAKNNGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYG
GADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIR
RIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWV
EETDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREE
ALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT
SFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTGRGRSKRFSGGFGARDYRQ
TSGGSGNFSGNRTGRNPGGHGGNRGFGGGGFGGNFYSNDGYGGNYSHSGSVDWWGN
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcattgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgacggacaaggcggaggaactggcaggcgttacattccacctcacttgagg
aacaaagatgcttccaaaaatgcaggaaatgcttattccgctggtagacagtgcggttat
tcagtggcaccagtaaatctcttttcttttaagcagtgcccacaaccatggcaggcagag
tgtcagcaaaggcacagaaataactatacttcaggatgggatgactgtaagattggtaac
tatagtgttaagtcgagcccaacactcatactgcatgagccagtaatcatgggtgagtct
ttttatagcctgcttccctacctttgctcaggttacccaagactggcctctcaagagctt
gccttttaccatgcctacagtgggggttggcgaaacagatgtgcctcatcctcagcctgc
actgataacagtgtggcctccgatgggaacgatgacacagccagtgtccaaagctgggca
gatcgttgtgactcacctggatgggacggcggacgcagcaatggatttgtgaatggttac
cacgacaaccgctccaacgggagcttcggagggcgtggaccccctcgcaatgatagaggt
gggcgtggtgcctaccgtggtaacaggggtggaggctcgtttaatcaaccattacaaaat
gcaggttttggcaattacgagaacaaagacggcaactggggaggagctcccagggacgct
gcctacaacagctttgggggacgaaatgataggtccaagtcgaccttcttcaatgaccgt
ggggcaggctcaagaggaagatatgagcgcgggggttttgcgggcggaggaaacagtcgc
tgggtggaggactccagagacgacgattggtccaagcccactgctcccaatgagcgcctg
gaacacgagcttttctctggaagcaacactgggataaactttgagaaatacgatgatatc
cccgttgaggccactggaagcaactgcccgccccacattgaaagcttccatgacgtggac
atgggggagatcgtaatggggaacatcaccctgagtcgctacactcgccccaccccagtc
cagaagcatgcgatccccatcatcaagtctaagagagacctgatggcctgcgcccagact
ggctctggtaagaccgctgccttcttgctgccagtgctgagtcagatctacactgagggc
ccaggagatgctctgcaggcagccaagaacaacggacaggagaacggaaggtacggcaga
cgtaaacagtacccgatctccctggttctggctcccaccagagagctggccctgcagatc
tacgatgaggcgaggaagtttgcctatcgctctcgtgtgcgtccctgcgtggtgtacgga
ggagctgatatcggtcagcaaatcagggacttggagagaggctgtcacctgctcgtggcc
acacctggacgtctggttgacatgatggagaggggcaagatcggtctggactattgcaac
tacctggtcctggatgaggccgaccgcatgttggacatgggttttgagccccagatcaga
cgcatcgtggagcaggatacgatgccgcctaaaggcattcgtcagaccatgatgttcagc
gccactttccccaaggagatccagatcctggctcgtgatttcctggaggattacattttc
ctggcagtgggacgtgtcggttccacttcagaaaatatcacccagaaagtggtctgggtg
gaggagacagacaagaggtccttcctccttgacctgctcaatgccacaggtaaagactcg
ttgactctggtgttcgtggaaaccaagaaaggagccgacgctcttgaagacttcctctac
cacgagggctacgcctgcaccagcatccacggagatcgatcccagagagacagagaggaa
gctctgcaccagttccgctctggacgctgccccatcttggtggctacagctgtcgctgcc
agaggtctggacatctccaatgtgaagcacgtcattaactttgatttgcccagtgacatt
gaggagtacgttcaccgtattggccgtacgggacgtgtgggcaacctcggtctggccacg
tcgttctttaacgacaaaaacagcaacataaccaaagacttgctggacatcttggtggag
gccaagcaggaggttccctcctggcttgagagcctggcctacgagcaccagcacaagagc
acaggccgcggacgctcaaagaggttctctggcggtttcggagccagagattaccgtcag
acgtccggtggttctggaaacttcagtggcaaccgtacaggacgtaaccctggaggccat
ggaggaaaccgtggctttggtggaggaggctttggtggcaacttctacagcaacgacggc
tacggaggaaactacagccactctggtagtgtggattggtggggcaactag
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integrated database retrieval system
