Seriola lalandi dorsalis (Yellowtail amberjack): 111657960
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Entry
111657960 CDS
T06058
Name
(RefSeq) hypoxia-inducible factor 3-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04137
Mitophagy - animal
slal04140
Autophagy - animal
slal04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111657960
04137 Mitophagy - animal
111657960
04148 Efferocytosis
111657960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slal03000
]
111657960
Transcription factors [BR:
slal03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111657960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
111657960
NCBI-ProteinID:
XP_023266085
Ensembl:
ENSSLDG00000006224
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MIIMATSSNEEKNPNPEIFSKSSNVEAGTRSSSEQRKLRSRDAARCRRSQETEVFYELAH
TLPLPRRVSTHLDKAAIMRVTLSFLRMHHLLASGENQKEESEEEEEEEEEEEDPMDAFYP
QALAGFIMVMTEEGDLIYLTENVSRHIGITQLELLGQSVYDFVHPCDQEELRDLLAPRPG
LSKKSTEQRSERNFFLRMKSTLTSRGRTVNIKSATWKVLHCTGHMCPFGGSSTSPPAARV
MTLLCEPIPHPSSVEFPLDTCTFLTRHSMDLRFTHCEGRVTELVGYKPDDLIGRSAYEFH
HALDSDHVNKSLHTLLSKGQVSTSHYRFLANSGGFVWAETQATVLYSSKTSQPEAVVCLN
FILSAVEQPDIVFSVEQTRCGQLHKSEPPSPQLPPEDCETAAACDSDGEQLASSSQTEDA
GSSPSSAANLFFKLKEPEELLQLAPEAGDAVVPLTGGFVELSFISPPSPNSLPDHPQDLC
TPQLRQLLTPIFNPITPPSSSSPASSPDPEPSIREEEEEEEEEMDTSKVEKFFAIRPEEG
QKTEETLENMEGMDLDMLAPYISMDDDFQLTFLSSLPEEADKASSSSPEPSAVSRKRTHN
PDEELPSQLMVQDKRQKQEPSSIEEELLLSHRLLDCLEETNQSDLILDPGPGGRSQLLTD
RDPILGGIQGLCDTAALMRDIFVSRPPDLSPPLSPMT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgattattatggcaacatcatcaaatgaggaaaaaaatccaaacccagagatattcagc
aaatcatcaaatgtggaagctggaacaagaagcagttcggagcagaggaagctgcgttct
cgtgatgccgccagatgtaggcggagtcaggagacagaggtgttttatgagcttgcccac
actctgccgctcccccgccgagtgtccacccacctggacaaagctgccatcatgagagtc
accctcagcttcctgcgcatgcaccacctcctggcatctggtgagaatcagaaagaggag
tctgaagaggaggaagaggaagaggaagaggaggaggatccaatggacgctttctatcct
caggcgttggctgggttcatcatggtgatgaccgaggaaggagacttgatctacctgacg
gagaacgtcagcagacacatcggcatcacacagctggagctactgggtcagagtgtttat
gactttgttcatccctgtgaccaggaggagctcagagacctgctggctccacgtccaggt
ctgagtaagaagtcgacagagcagcggagcgagaggaacttcttcctgcgaatgaaaagc
acactgaccagcagggggcgcacagtcaacatcaagtctgctacctggaaggttctccac
tgtacaggtcacatgtgtccctttggtggcagctccacgtcgccccctgcagccagagtg
atgaccctgctgtgtgagcccatccctcacccgtccagcgtggagttccctctggacacc
tgcaccttcctcacccgccacagcatggacctgcgcttcacacactgcgagggcagggtt
acagagttggtgggatacaaaccagacgatctgattggtcgctcagcctacgagttccat
catgcgctcgactctgatcacgtcaacaaaagcctgcacacattgctgtccaaaggtcag
gtgagcaccagtcactaccgtttcctggcaaacagcggcggctttgtctgggcagagacc
caggcgaccgtcctctacagcagcaagacgtcgcagcccgaggccgtcgtctgcctcaac
ttcatactgagcgcagtggagcagccagacattgttttctctgtcgagcagacccgctgt
ggccagctgcataaatctgaacctccatcaccacagcttccaccagaggactgtgagact
gctgctgcctgcgactctgacggtgagcagcttgccagctccagtcagactgaggacgca
ggttcaagtcccagcagcgctgcaaatctcttcttcaaactgaaggagccagaggagctt
ctccagttggctcctgaggctggagacgctgtcgtaccactgacaggaggttttgttgag
ctgtcgttcatcagtccgcccagtccaaactcactgccggaccaccctcaggatctgtgc
actccacagctgcgacagctcctcacgcccatcttcaaccccatcacgcctccttcctca
tcctcaccagcctcctcacctgatcctgagccgagcatccgtgaggaagaggaggaggaa
gaggaggagatggacacaagcaaggtggagaagttctttgccattaggccagaagagggt
cagaagacagaagaaacactggagaacatggaggggatggatctagacatgttggctcct
tacatctctatggacgatgacttccagctgaccttcctcagcagtctgccggaggaagcc
gacaaagcttcgtcctcctcccctgaaccttcagctgtgagcaggaagcggacccataac
ccagacgaggagctgccgtctcagctgatggtgcaggacaagaggcagaaacaagaacct
tcctctatagaagaggaactccttctcagccacagattactggactgtctggaggaaacc
aaccagtcagatctgatcttagacccgggcccaggggggcggagtcagctactcacagac
agagaccctattttaggaggcatacagggactctgtgatactgcagctctcatgagggac
atattcgtatcccgtccacctgacctgtcgccgcctctctcgcccatgacttga
DBGET
integrated database retrieval system
