Seriola lalandi dorsalis (Yellowtail amberjack): 111659426
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Entry
111659426 CDS
T06058
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03420
Nucleotide excision repair
slal04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111659426 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
111659426 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slal04121
]
111659426 (ddb1)
03400 DNA repair and recombination proteins [BR:
slal03400
]
111659426 (ddb1)
Ubiquitin system [BR:
slal04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
111659426 (ddb1)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
111659426 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
111659426 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
111659426
NCBI-ProteinID:
XP_023268149
Ensembl:
ENSSLDG00000015804
UniProt:
A0A3B4XX38
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEAGAESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggttacagcccagaaacctacggcagtgaacgcctgcatcacc
ggtcacttcacgtctgcagaagacctcaatctgctcatagccaaaaacacacggttggag
atctatgtggtcacagcagaggggctgcggcccgtcaaagaagtcggcatgtatggaaag
attgccgtcatggagctctttaggcccaagggtgagagcaaagacctgctgttcatcctc
acatccaagtacaacgcctgcatcctagaatacaagcagaacggggagagcatcgacatc
atcacccgtgcccacggcaacgtccaggatcgtattggacgcccatcagagacgggtatt
atcggaattgtagacccagaatgccgcatgatcggcctgcggctgtacgacgggttgttc
aaggtgatcccgttggaccgggacaaccgtgagctcaaggcctttaacatcagactggag
gagctgcaggtcattgatgtccacttcctgtacggctgccaggccccgaccgtctgcttc
atctaccaggatccccagggacgccatgtgaagacctatgaggtttctctgagggagaag
gagttcaacaagggcccctggaagcaggagaatgtggaggctgaggcatcaatggtcatc
ccagtgccagagccatttggtggagctataatcataggacaagagtccatcacttatcac
aatggagacaaatacttggccattgcacctcccactatcaagcaaagtaccatcgtctgt
cacaaccgggtggacccgaatggctcgcgctacctgctgggggacatggagggacggctg
ttcatgctgctgctggagaaggaggagctcatggacggcacagtggcgctcaaagacctg
cacgtggagctgctcggagagacgtctattgctgagtgtttgacctacttggacaacggt
gtggtcttcgtgggctccagactgggtgactcccagttagtcaagctcaacgtggacagc
aacgaccagggctcgtatgtgggggtgatggagacgttcaccaatctggggcccatcgtg
gacatgtgtgtggtggacctggagaggcaaggccagggtcagctggtgacgtgctcaggt
gccttcaaagagggctccctccggattatccgcaacggcatcgggattcatgaacatgcc
agcatcgacctgccgggaatcaaaggtttgtggccgctgcgctccgaggccggcagagag
acggatgacatgctggtgctgtctttcgtgggtcagacacgagtgctgatgctgagtggc
gaggaggtagaagagactgaacttccaggctttgtggacaaccagcagacgttttactgt
ggcaacgtcgcgcaccagcagctcattcagatcacgtccggctctgtgcgcctggtgctc
caggacagcaaggcgttagtgagtgaatggaaagagccgcagggcaggaacatcagcgtg
gccgcctgcaaccacactcaggtggtgctcgctgtgggccgggccctgtactacctgcag
atcctggccggagagctcaaacagataagtaccacggagatggagcacgaggtggcctgc
ctggacatcacacctctgggggaggccggcgctgagtccccgctctgtgccgtgggactg
tggactgacatctcggcccgtgtgctcaaactgccctgcttcaccgccctgcacaaggaa
atgctgggcggagagatcatccctcgctcaatcctgatgaccacctttgaaggcagctac
tacctgctgtgtgccctgggagacggagcgctcttctactttggcctggacctgcagact
ggcgccctcagcgagcgcaagaaggtgacgctcggcactcagcccactgtgctgaggacc
ttcagatccctgtccacgtccaacgtcttcgcctgctccgaccgacccaccgtcatctac
tcctccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
ccgctgaactccgagggttaccccgacagcctggctctggccaacaacagcactctgacc
atcggtaccatcgacgagatccagaaactccacatccgcaccgttcccctctatgagtct
cccaggcggatctgttaccaggaggtgtcccagtgtttcggggttctgtccagccgggtg
gagatccaggacgtgagcggcaccacgtctgccgtacgccccagtgcgagcacgcaggcg
ctctccagcagcgtgagctccagcaagctgttccccagcagcacctctccccacgagacg
tccttcggagaggaagtggaggttcacagtctgctcgtcgtggatcagcacacgttcgag
gttctccacgcccatcagttcctccccagcgagtacgccctcagcatggtgtcatgtcgt
ctgggaaaagacccgtcggtgtacttcatcgtcggcaccgccatggtttacccagaggag
gccgagcccaagcagggacgcatcatcgtcttccactacactgacggtaagctgcagacg
gtggcggagaaggaggtgaaaggcgccgtctactcgatggtggagttcaacggcaaactg
ctggccagcatcaacagcacagtccgtttgtacgagtggacggccgagaaggagctgagg
acagagtgtaaccactacaacaacatcatggctctgtacctgaagaccaaaggagacttc
atcctggtgggggacctgatgaggtccgtcctgctgctggcgtacaaacccatggagggg
aactttgaggagattgctcgtgacttcaatcctaactggatgagcgccgtggaaatcctg
gacgacgacaacttcctgggagcggagaacgccttcaacctgtttgtctgccagaaggac
agtgcggccacgacggacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagtttgtcaacgtcttctgccacggctcgctggtgctgcagaacctcggcgagagc
tccacgcccacccagggctccgtgctgtttggcaccgttaatggcatgattggtctggtg
acctccctgtccgagggctggtacagtctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggaaagatcgagcacagcttctggaggtccttccacaccgagcgc
aagacggagcaggccacgggattcatcgacggggatctgatcgagagtttcctggatctc
ggccgggccaagatgcaggaggtcgtcagcactctacagatcgatgatggcagcggtatg
aagcgtgaagccacagtagacgaggtcatcaagattgtggaggagctgacgaggattcac
taa
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