Seriola lalandi dorsalis (Yellowtail amberjack): 111661877
Help
Entry
111661877 CDS
T06058
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
DUF4992
DUF460
Motif
Other DBs
NCBI-GeneID:
111661877
NCBI-ProteinID:
XP_023271333
LinkDB
All DBs
Position
Unknown
AA seq
1604 aa
AA seq
DB search
MSPHLPVSSSSSSSSSSSSSSSSSSSFWLMLFFLLSVFLLLSPGVHGQGRLKLTVLSEDR
LQMKWKEADGPVQGYKVRVRPISEDPQPELMLTTTRGRATVAGLDSGQEYALQVLVLNGT
TEKLLAKRRFTMEGLREEEMIRSGSREQRKKLLPGGSGSGDLDDATEALLGVPTILYPDP
TTTITSTTTITTAATTEPPATETPSQLPDEAPEKTTKEKRKRKKEKERDRSKVENKEEQG
TTQGKRAEDKPRKAPFPTQPVTGASPRKPFECNSDAAADIMLLVDGSWSIGRTNFRRVRD
FLEGLVTPFHIGPNHIQIGLTQYSGDPRTEWHLSNFTTKDQLLEAVRNFRYKGGNTFTGQ
ALLHVMEENMRAEAGARSDMPFFLVLLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADE
AELRQVASEPVDLNVYNVNDFPLLTKLVARLVHILCRRIEDRGIKKRMEPAPTADPALSY
PSPTDLRFSDLGSREVKLHWTNPAKPVQQFRVVYHSAEGQRPQEVVLAGSESTVLLEGLS
SQTLYHVSIFPVYEDNVGLALRGTVTTLALAMPANLEVTPVSFSALRVSWGAAPGATQYM
ILYSALSHGEPDDAKEEKFSAEQTVVELAGLLPETDYSVTLYALYDEDPSDPVTAVAATF
PLPPPLSVQFPMVTHSGLRVTWVPGAVDVPGHRITYSTNHGSDVKQVEVTGLISVLVQNL
SSLSRYRVSVQSHYPQGLSAALTSNVTTLKVPSPSDLRVSNFSGSDITVRWEAAADDVVS
YLIKWISLSGGDLRQLRVSGESEGAILEGVEDDKEYQISLSALYGDGAQSEAVAIRYSTL
SGGGPASVSVSEETAVSFVVSWVPPNAHVLRYRVSYTALTGAETQDDTVLVPGVEKRVVL
ESLQPDTRYSILVTAEYRNREGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVD
GYRIVIQSVKDKDTKEETVDESSSSHCFTDLEPETLYRISVHSLLGSAEGAAVSILHPTA
KAPARIPIHPWMYPIHNEVCPEVTIRNSIVKGFDMMEAFGLTQRAHSSVEGVAAEPFVFN
TVPTFTLYRDVQLTQSTKFIHPAGFSPEHTISIAFRVLQDTPREPFALWQLTDDDFQPKM
GVVLDAATKHLVYFSLDYRGEVQELTFDQPQVHRLFYGSFHKIHLSVSQVSVSLSVDCQR
VGERPARPLGNLPTDGFEMLGKLVKTRGPSSGSAPFQLQSFEIVCNTTWASEDTCCDLPG
LRDEESCPAPAYTCSCSSDIPGAPGSPGPIGKPGPRGGKGDKGEQGQKGEVGPPGKSGFE
GGLGLLGSAGPRGMTVQGKAGPPGAAGSKGDPGRPGLQGLPGPPGPKGEVGIAGPQGIRG
VEGNIGAPGITGPRGFQGMPGHPGPLGERGHSGPVGPSGLPGNKGERGEKGEPQSMAMIY
QLVTQACEQLVHKEVLKLDMFINEVSRKPAPIEEPVGPPGEPGIPGPKGPPGGRGAMGNV
GPRGRPGRAGYPGEQGQRGMPGNKGEAGTKVQGPTGVKGFAGPPGETKLGAPGPKGDDGK
SGPLGIPGAPGQPGEIGPPGVCDSSGGCQRVPEQTEDPYYGYQP
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacctccccgtgtcatcttcgtcatcttcatcatcatcctcatcatcctca
tcatcatcatcatcttcattctggctaatgctgtttttcctgctcagtgtcttcctgcta
ctgtccccgggggtccatggccaaggtcgtctgaagctcacggtcctatctgaggacaga
ctgcagatgaaatggaaggaggccgatggacccgttcagggctacaaggtccgagtgagg
cccatctcagaggatccgcagccggagctgatgctgaccaccacgcgtggccgggccacc
gtggcgggactggactccggtcaggaatacgccctccaagtcctcgtgctcaacgggacg
acagagaaacttctcgccaagagacgattcacgatggaaggtctgcgggaagaagaaatg
atccgcagcggtagccgagagcagaggaagaagttgttgccaggtgggtcggggtcagga
gacctggacgatgcaacagaggctctgctgggcgtgccgactattctgtatccagacccc
accaccaccatcaccagcaccaccaccatcaccactgctgctactacagagcccccagcc
acagaaaccccctctcagctccccgatgaggccccagagaaaaccaccaaagagaagagg
aagaggaagaaagaaaaagagcgggatcggtctaaggtggagaacaaggaggagcaggga
accacacagggtaaacgggccgaggacaaaccccggaaggctcccttccccacccagccg
gtcacaggtgcgtctccaagaaaaccgtttgagtgcaacagtgatgcagcggcggacatc
atgctgttggtggacggctcctggagcattggacgcactaacttcagacgtgtcagagac
ttcctggagggcctggtgacacccttccacatcgggcccaaccacattcagatcggtctg
acccagtacagtggggaccctcgtaccgagtggcacctcagcaacttcaccaccaaagac
cagctgctggaggcagtgaggaattttagatataagggaggaaacacatttacaggccag
gcgctgctccacgtcatggaggagaacatgagggccgaggcaggagcgaggtcggacatg
ccgtttttcctggtcttgctgaccgatgggaaatctcaggatgatgccattgctgcggca
aaccgtctgaagaatgccggcgtggagatcatcgctgtaggtgtgaagaacgctgatgaa
gccgagctgagacaagtggcgtcggagccggtggatctgaacgtctacaatgtcaatgac
ttccctctgctcactaaactggtggcacggctcgtccacatcctgtgtaggaggatagaa
gaccgtggcattaaaaaacgaatggagcctgcgcccacagcagaccctgccctctcctac
cccagtccgactgatctgcgcttctctgacctgggctccagagaagtgaagctccactgg
accaatcctgctaagccagtccaacagttcagagtggtttaccacagtgccgagggtcag
agaccacaggaggtggtgctggccggctcagagtccactgtgctgctggaaggcctctcc
tctcagaccctgtaccacgtctccatcttccctgtgtatgaggacaatgttggcctggct
ctcagaggaactgtcaccacattggccctcgccatgcccgccaacctggaggtgacgcct
gtctccttcagcgcgctgcgagtgagctggggtgcagcgcccggagcgacgcagtacatg
atcctgtactcagctctgagccacggagagcctgacgacgccaaggaggagaaattcagc
gcagagcagacggtggtggagctggcggggttactgccggagacagactactctgtcacg
ctgtacgctctctacgatgaggatcccagcgaccctgtcactgccgtcgctgccacattc
cctctcccgccgccgctgagcgttcagttcccgatggtcacccacagcgggctgagggtg
acctgggttcccggagccgtggacgtccccggccacagaatcacctacagcaccaaccac
ggcagcgacgtcaagcaggtggaggtaacagggctgatctcggtgctggtgcagaacctg
tcctctttgtcaagataccgggtttcagtccagtctcactacccacaaggcctttctgcg
gcgctcaccagtaacgtcaccacactgaaggtgccctcgccatcagacctcagggtgtct
aatttctcaggcagtgacatcactgtgcgctgggaggctgcagctgatgatgttgtgtcc
tacctcatcaagtggatctccctcagtggaggagacctgagacagttgagggtgagcggt
gagagcgaaggggcgatcctggagggggtggaggacgataaggaataccagatctctctg
tctgcactttatggagatggagctcagagcgaagctgtggccatacgctatagtaccttg
tctggtggaggcccagccagtgtgtcagtctccgaggagactgcagtcagcttcgtggtc
agctgggtgcctcccaacgctcacgtcctccggtaccgcgtgtcttacactgcgctgact
ggagctgaaacccaggacgacactgtgttggtcccaggtgttgaaaagcgggtggtgcta
gagtctttacagccagacacacgttacagcatcctggtcaccgctgagtaccgcaacaga
gaaggaggcagtggttcagctcagggcaaaaccaccagtctgcgggtgagcagtgtgagt
gtggtcaggtcagaccactccagcatttgtgtgtcttggagaccggtgtctgccgtggat
gggtatcgtattgtcatccagtctgttaaagacaaggacacaaaggaggaaacggtcgat
gagtccagcagcagtcactgcttcactgacctggaaccagagactctgtatcgcataagt
gtgcactcgctcctcggctcagcagaaggcgccgctgtgtccatcctgcatccaacagcc
aaagctccagccaggattcccatccatccctggatgtatcccatccacaacgaagtgtgc
cctgaagtcaccatcagaaacagcatcgttaaagggtttgacatgatggaagcgttcggt
ctgactcagagagctcactcgtccgttgaaggcgtggcagccgagcctttcgtcttcaac
accgtccccaccttcaccctgtacagagacgtccagctgacacagagcaccaagtttatc
caccctgcaggcttctctccagagcacaccatcagcatcgccttccgcgtgttgcaggat
acacccagggagcccttcgccctctggcagctcactgacgatgacttccagcccaagatg
ggagtggtgctcgacgctgctacgaagcatctggtgtacttcagtctagactacagggga
gaggtgcaggaactgacctttgaccagccgcaggtccacagactcttctatggcagtttt
cacaagattcacctgtcagtcagccaggtgagtgtgtccctgtctgtggactgccagcgt
gtgggtgagagaccagcccgccctctgggaaacctccccactgacggctttgagatgctg
ggaaaactggtgaagacccgaggacccagtagcggatctgccccgttccagctgcagtcc
tttgagatcgtctgtaacaccacgtgggcctcagaggacacctgctgtgacctgcctgga
ctgagagatgaggagagctgtcctgccccggcgtacacctgtagctgttcctctgacatc
cctggagctcctggttcccccggaccaattggaaaaccaggtcctcgtggtgggaaaggc
gataagggagagcaaggccaaaagggggaagtgggtcctccaggaaaatctggatttgag
ggaggccttggactcctcggcagcgcagggccccgaggaatgactgtccagggcaaagcg
ggtccaccgggtgcagcggggtcaaaaggcgatcctggtcgacctggactccagggttta
ccaggacctccaggtccgaaaggggaagtggggatcgcagggccccagggcatcagaggg
gtcgagggaaacattggtgcacctggtatcactggacccaggggtttccaaggaatgccg
ggacacccagggcctttaggggaaaggggccactcaggacctgtgggaccttcgggtctg
ccaggtaataaaggggaacgaggagagaagggggaacctcagtctatggccatgatctac
caactggtcacacaagcctgtgagcaactagtgcacaaggaggtgttgaagcttgacatg
ttcattaacgaggtcagtcgtaagccagctcctattgaggagccagtggggcccccgggg
gaacctggtataccaggacccaagggcccaccaggtggcaggggtgccatgggaaatgtt
ggcccaagggggagacctggcagggctggatatccaggagagcaggggcagagagggatg
ccagggaataaaggcgaggcagggaccaaagtccaggggcccacaggggtcaaaggattt
gcaggtcctccaggtgagaccaagctgggagccccaggtcccaaaggagatgatggtaag
tcaggacctcttgggatccctggagctcctggacagccaggcgagatcggacccccgggt
gtgtgcgacagtagtggaggctgccagagagttcccgagcaaacagaagacccttattat
ggctaccagccctga
DBGET
integrated database retrieval system
