Seriola lalandi dorsalis (Yellowtail amberjack): 111662056
Help
Entry
111662056 CDS
T06058
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382
Cornified envelope formation
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111662056 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111662056 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111662056 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111662056 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111662056 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111662056 (col4a1)
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111662056 (col4a1)
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111662056 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111662056
NCBI-ProteinID:
XP_023271570
LinkDB
All DBs
Position
Unknown
AA seq
1540 aa
AA seq
DB search
MLLPSGTLLLLAALYSSVDLTGAEGCGASCGKCDCSGVKGTKGERGFPGLQGNMGFPGMQ
GPEGPPGQLGPKGDSGESGAPGMKGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCN
GTKGDRGLDGSPGFPGLQGPPGIPGLHGMKGDPGGVIGIVPLKGDRGFPGTPGLPGSIGT
PGPTGPPGPRGYQGPKGDPGLPGPPGEKGDKLAFVSEKGDKGDAGFRGPPGPPGPPASGV
EGGHTTVHLPGPPGDRGVKGEKGEQGFCIPHLEGVKGEPGPPGPRGKPGKDGEFGLKGER
GFPGVPGYTGSQGEKGEKGPPGFGIGAPGPPGSPGFPGKEGERGFPGPRGEAGPPGQHIE
GPRGERGEKGDMGEKGDRGIEGESLVGPPGQPGIPGPPGEPGLPIDPNECDIEKGAPGPP
GPPGLQGELGQKGDKGDTCVKCEASGAPGLPGPPGPKGEHGPPGSVGYKGEKGQSGAPGQ
PGRPGIQGNPGLMGAPGAIGEPGDIFIAPGLKGDKGLPGSAGSPGQPGSNGLPGRDGIPG
QPGPKGEPAKEGIKGERGLDGDPGLIGPPGERGPPGVPGIGQPGESGEKGSPGRPGLPGV
PGQPGTKGEPGVGVSTPGPQGVPGPRGETGRPGLQGDRGLVGDQGLPGFPGQKGEHGPPG
IGLPGPTGPKGIGGIPGATGLPGEPGRPGQDGLSGRPGLPGQKGEPGRGLPGPKGSQGLP
GVIGFQGEKGSIGLPGIPGREGETGLPGPQGIKGEIGPPGLPGLIGSPGAPGKGSPGAPG
PQGPPGEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGIPGFPGLAGSKGLPGQPGLPGR
DGLIGNQGETDKQWQKFIKLSEKGDPGFPGEPGSIGQPGQKGTVGEMGIPGVSGPKGTKG
DIGKSGHPGFRGTDGQKGDKGAAGEPGIGIPGYPGEKGQTGQPGFPGTPGEKGQKGHEGM
PGKPGSQGTKGDKGSIGYPGQPGRPGEKGTPGLPGSAGEPGNEGRPGEGGLQGPPGPPGE
KGDPGVDGIPGSSGERGDPGLPGHGFQGPPGTFGGKGDKGSPGIPGTPGHPGVPGIKGDK
GLSGPQGPTGEPGERGAQGISVEGPKGERGETGQPGEAGSPGGPGPAGVPGRHGHKGEKG
DQGLPGFQGETGQKGDPGFSGLPGQPGLPGIDGHKGERGLQGVPGFPGVKGQFGDSGFKG
EIGDRGFPGEKGNEGPPGPPGPHTFVKGDIGFPGIQGLPGPQGPSGFPGQKGLQGMTGIP
GPKGEDGHPGFHGQSGAKGEPGLPGPQGPRGHPGPPGPDGVPGQVGPPGPSSMDHGFLVT
RHSQSVEVPFCPEGTSPIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINN
VCNFASRNDYSYWLTSPEPMPMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPP
CPHGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSY
SFWLATIEDNEMFTKPVPTTLKAGNLRTHISRCQVCMKRT
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgcttctgctggcggctctctactcaagtgtagacctg
acaggcgctgagggttgtggggcatcatgtggaaaatgtgactgcagtggtgtgaaagga
acaaagggtgagcggggatttcctggtctccaaggtaatatgggattcccagggatgcag
ggacctgaggggcctccagggcaattgggccccaagggagattcaggtgaatctggggct
cctggaatgaaaggagtgaggggtccgcctggtctgccaggtttcccgggaaacccagga
ctaccaggcatcaatggaaacgacggcccaccaggagcaccaggtatcccaggatgcaat
gggactaaaggagacagaggactggatggctctcctggttttcccggtcttcaaggacct
cctggcatcccaggacttcatggaatgaagggtgaccccggtggtgtgattgggattgtt
ccactgaagggagacagaggattccctggcacacctggattacctggatcaatcggaact
cctggacctactggacctccaggacctcgtggatatcaaggacccaaaggtgatcctggc
cttcctggccctccgggagagaagggtgacaagctggcttttgtgagtgagaaaggagac
aagggtgatgctggatttcgtggcccgcctggtccccctggacctcctgcatcgggtgtt
gaaggaggacataccacggtgcaccttcctggaccaccgggagacagaggagtcaaagga
gagaaaggagaacaaggcttttgcatccctcatctcgaaggtgtcaaaggtgaacccggc
ccacctggaccaagaggtaaacctggaaaggatggagagtttgggctaaagggagaaaga
ggctttccaggagttcctggatacaccggttcccagggtgaaaaaggagaaaaaggacca
ccaggttttggtattggtgcccctggtcctccaggttctcctggtttcccagggaaagaa
ggagaaagaggttttcctgggccccggggcgaggcaggtccaccaggccagcacattgaa
gggcctcgaggagagaggggtgagaagggagacatgggtgagaaaggagatcggggtata
gaaggagagtctctggttggacctccaggacaaccaggaattcctggacccccaggagaa
ccaggactcccaattgaccctaatgaatgtgacattgagaaaggcgctcctggcccacct
ggacctccagggttacaaggggaactgggacagaaaggtgacaaaggagatacctgtgtt
aagtgtgaagcttccggtgcacctggattacctggccccccggggcctaaaggagagcac
ggacctcctgggtcagtaggatacaaaggagaaaagggtcaatcaggagctcctggacaa
cctggacgacctggtattcaaggcaatcctgggttgatgggagctccaggtgctattggt
gagcctggggacatattcatagctcctggtttgaagggagacaaaggtcttcctggttct
gctgggtcaccggggcagcctggatcgaatggactgccagggagagatggcataccgggt
caacctggccccaaaggagaacctgccaaagagggcattaagggtgagcgtggactagat
ggggaccctggtcttatcgggcccccaggagagaggggtccccctggtgtgccaggcatc
ggtcaaccaggagagtcaggagagaaaggcagtccagggagaccaggactgcctggagtc
cctggacaacctggtacaaaaggtgagccaggtgtaggtgtgagtactccaggacctcag
ggagtacctggaccacgaggagaaaccggcagacctggacttcaaggggacagaggcctg
gttggagaccaagggttgccaggtttccctggacagaaaggtgaacatggaccccctgga
attggtttgccaggcccaacaggtccaaaaggaatcggtggtatcccaggagctacagga
ttgccaggagagccaggaagaccgggacaggatggcttgtcgggacgacctggtctacct
ggacaaaaaggtgaacctggacggggtcttccaggcccaaaaggatcgcagggcctccca
ggagttattggcttccagggagagaagggtagcattggacttcctggtattcctggacga
gaaggcgagacaggtctaccaggacctcagggaatcaaaggtgaaatagggcccccaggg
cttcctggactgattggctcacccggtgctccaggaaaaggttcacctggagctcccgga
ccacagggaccacctggagagcctggaccatatggtagagaaggtgtaaagggagaaaag
ggctaccctggtcctcctggtctggacatgccgggacctcagggagaaaagggaatccct
gggttcccagggcttgcaggctctaaaggactgccagggcaaccaggcttaccaggcagg
gatgggctgattggaaaccaaggtgagacagacaaacagtggcagaaatttataaagttg
agtgagaaaggagaccctggttttcctggtgaacctggcagcattggacaacctggacag
aagggcactgtaggagagatgggaataccaggtgtgagtggcccaaaaggtactaaagga
gatattggtaaatcgggacatccaggattcagaggcacagatggacagaaaggagacaag
ggagcagctggtgagccaggtattgggatcccaggatatccaggagaaaagggtcagaca
ggccagccaggattcccaggaacacctggagaaaagggtcagaagggtcatgagggtatg
cctggcaaaccaggatcgcaaggaactaaaggagataaaggaagcatcgggtatccaggc
cagccaggtagaccaggtgagaaaggtacgcctgggcttccagggtctgcaggagaacct
ggtaatgaaggccgacctggtgaaggtggcttgcagggacctcctggacctcctggagag
aagggagatcctggagtggacggcatccctggatcctcaggggagagaggagacccaggt
ttacctggccacggtttccaagggccacctggaacatttggtggcaaaggcgacaaaggt
agtcctggcatccctggcactccaggtcatccaggtgtccctggtatcaaaggcgacaag
ggactttcaggcccacagggaccaacgggtgagccaggagagagaggggctcaaggtatc
tctgtagaaggccctaagggagagaggggagaaacaggacaacccggagaagcaggatcc
ccaggaggaccaggaccagctggtgtgccaggcagacatggccataagggagagaaagga
gatcagggtctgcctggtttccagggagagacgggacaaaagggtgaccctggattttct
ggactccctggacaacctggtcttcctggtattgatggacataagggagagaggggattg
caaggtgttcctggcttcccaggtgtaaagggtcaattcggggacagtggattcaaagga
gagattggagacagaggattccctggagaaaaaggtaatgaaggtcctcctggcccccct
ggcccccacacctttgtcaaaggagacattgggttcccaggaattcaaggtcttccagga
ccgcagggtccatcagggttccctggacagaaaggactgcaaggtatgacaggtattcca
gggccaaaaggtgaagatggccaccctggatttcacggtcagtctggagccaaaggagag
cctggccttccaggaccacaaggacccagaggacacccaggtcctccaggacctgacggc
gttccaggtcaagtgggtccacctggcccctcctccatggatcatgggttcctcgtcacc
cgtcacagccaatcagtggaggttccattttgtcctgagggaacctcacccatatatgat
ggctactccttgctctacgtacaaggcaacgaacggtctcatggacaggacttgggtacg
gcaggcagctgtttaagaaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctctcgtaatgactactcctattggctcacctcccctgagcccatg
cccatgagcatggcgcccatcactggtgaaagcatcaaacccttcatcagcaggtgtgct
gtgtgtgaagccccagccatggtgatagcagttcacagtcagaccatcatgatccctccg
tgccctcacggctgggactctctgtggattggctactcctttgtcatgcacaccagcgct
ggtgctgagggttcaggccaggctctggcctctcccggttcctgtctggaggaattccgc
agcgctccattcatcgagtgtcacggtcgtggaacctgcaactactacgccaactcctac
agcttctggcttgctaccattgaagacaacgagatgtttacgaaacctgtcccaacaacg
ctaaaagcaggcaatctcagaacacacataagccgctgccaggtgtgcatgaagaggaca
taa
DBGET
integrated database retrieval system
