Seriola lalandi dorsalis (Yellowtail amberjack): 111662170
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Entry
111662170 CDS
T06058
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382
Cornified envelope formation
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111662170 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111662170 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111662170 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111662170 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111662170 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111662170 (col4a2)
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111662170 (col4a2)
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111662170 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111662170
NCBI-ProteinID:
XP_023271715
Ensembl:
ENSSLDG00000019677
UniProt:
A0A3B4YRB4
LinkDB
All DBs
Position
Unknown
AA seq
1677 aa
AA seq
DB search
MSGTMQGRHSRGLKNLRLLLLCLTVAILASGVHAGGKKHSGPCGGRDCSGDCKCFPEKGA
RGHPGPVGPQGQQGPPGRQGDPGIQGQKGQKGDLGRGGIIGPKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTHGDAGFPGQTGYNGSPGFPGQPGRKGEKGDSLELSVYME
RFRGDPGTPGIHGIFGPPGNPGRPGNQGFPGPKGPPGPPGPRGPKGTMTKVIKGTKGDQG
DIGPPGHPGNSTHPLTLSPYGPPGHPGEQGLKGEMGDSAYNRGETGVMGFPGSRGPPGAD
GIPGPRGDPGEAGPNGRDGHKGVRGDPGDLISSGSHWPSSSDAGPPGPPGEQGQQGERGP
VGDQGPPGPPGYPASYTQQQVYEFFGPFGIKGEQGEKGQQGEAGMPAVSAGPPGIHGRPG
ARGPQGPKGTWAEFFKGAPGGGGRPGNAGSKGVKGDHGDCECSTVTSPVGLPGPAGDRGD
IGMTGEFGQQGDVGDPGPQGDDGFPGFPGLDGVPGPKGRKGDASVATQKGYAGDPGVSGQ
DGESGAPGAQGFNGSPGFPGSRGPPGEGPVGDRGDKGFPGFPGRPGVAGLRGEPGAVLGA
LKGQRGLPGDDGQAGYHGVPGTPGRPGDCSPTGDGGQVDVTGPCSAIPGPPGLPGLPGPS
GLPGFPGLLGQKGQQGPFGVEGEKGETGDQGIGGRPGPPGFAGPRGDLGFPGSKGSVGVP
GLPGVPGRHGAQGGKGVHGEVLGASPGARGDPGLPGLQGNKGLSGGQGVPGHPGTIGMPG
MIGFKGDSGPAGLQGEEGRPGPAGKYGYPGDPGRAGPPGPHGTIGQPGITGERGTEGDSG
PPGPIGLKGIPGEYGNNGVIGEYGSPGNPGPIGADGCPGVPGMKGYKGSPGMSGFEGTRG
DLGVKGLSGLRGEPGVPGEFGQKGGTGKSGEKGDRGLRGAPGDKPKIPAQMIVDMKGAKG
ERGFIGEQGFTGPRGFKGFPGVPGSEGVHGFPGDPSNEKGYQGDPGAQGLPGIKGMPGLT
GNRGITGFQGMSGNKGIKGSPGAYGASGDPGRKGGKGDKGPRIDLPGSTGLRGEEGFQGV
PGQTGLIGQTGDRGTIGFDGIGGKKGDSGDPGIYGFQGSDGQNGTPGNQGQKGFPGTPGN
QGHPGFPGFPGNKGFPGLKGLYGLHGLKGQKGVPGTPGLDIIGPAGEPGAKGERGESGDP
NNQSGVPGTAGLKGFQGPLGDHGQPGPPGFRGPIGPDGTPDRQGPSGDHGFIGVKGYQGF
PGPRGFPGVDAPPGEKGISGFNGFPGVPGRKGFKGDQGSFGQKGPNGVSGKKGIKGEQGL
MGVPGMIGVKGERGPVGPKGNTGPPGFQGFPGNQGPPPLPVRIPGERGPPGPQGIRGPKG
VTGEPGPQGPPGDGGFIGPRGQKGMPGIGGTPGTAGFRGKVGHMGHPGLQGMEGHRGNPG
IPGLPGMPGRSVSVGYLLVKHSQSDQTPMCPVGMNKLWNGYSLLYLEGQEKAHNQDLGLA
GSCLPRFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCE
APSVAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTP
FIECNGAKGTCHYFANKHSFWLTSIDQSFHTDPASETLKAGQLLSRISRCQVCMKNL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaagggcgacacagcagaggactgaagaatctgaggctgctgctc
ctgtgcctcaccgttgccatcctcgcctcaggagtgcacgcaggtgggaagaagcacagt
ggcccctgtggagggagagactgcagcggagactgtaaatgtttcccagaaaagggtgcc
aggggtcaccctgggccagttggtcctcagggtcaacaggggcctccaggaagacaaggt
gatccaggcatccaaggacagaaggggcaaaaaggtgacctcggccgtggtggcatcata
ggtcctaaaggaaatgtgggaatgacaggcgttcctgggttttctggcaacgatggaata
cccggccacccaggacaggctgggcccagggggaagccaggtgcagacggatgtaatggg
acgcacggagacgcagggttcccaggacaaactggttataatggctcacctggttttcct
ggacaaccaggcaggaagggagagaagggagactccctggagctgagtgtgtacatggag
cgtttcaggggagatccaggcacgccagggatccatggaatatttgggccgccaggaaat
ccaggacggccgggtaaccaaggcttcccaggaccaaagggtcccccagggcctccaggt
cccagaggaccgaagggcactatgaccaaagtgattaagggaaccaaaggagaccaaggg
gacataggaccaccagggcacccaggaaactctactcatccacttactctgtccccctac
ggacccccgggacatcctggtgaacaaggtctgaagggagaaatgggagattcggcgtac
aacagaggagaaactggtgtaatgggattccctggatcaagggggccacctggtgctgat
gggattcctggaccaaggggggatcctggtgaagcgggaccaaacggcagagatggacat
aaaggagtcaggggtgacccaggagatctgatttcatctggaagccattggccttcgtcc
tcagatgctggtcctcctggtccccctggtgaacagggtcaacaaggagagaggggccca
gtaggagatcaaggcccccctggacccccaggatatcctgcctcttatacacagcaacaa
gtgtatgaattcttcgggccatttggtataaaaggcgagcaaggagagaagggccaacaa
ggggaagcagggatgcctgctgtcagtgcaggacccccaggcatccatggacgcccaggg
gccaggggccctcaaggacctaaaggaacatgggctgagttcttcaagggggctccaggc
gggggaggaaggcctggaaatgcaggctctaaaggagtgaaaggtgatcatggagactgt
gagtgcagcactgtaacctctccagtgggactacctggccctgccggggatcgtggtgat
atagggatgactggagagtttggtcagcagggtgatgtaggagacccaggtccccaagga
gatgacgggttccctggctttcctggactcgatggagtaccaggcccaaaaggccgaaaa
ggggacgcaagtgtggccacacagaaaggatatgctggagacccaggggtctctggacaa
gatggtgagtcaggagcgccaggtgctcaaggcttcaacggttctcctggtttccctggg
agccgaggtcctccaggagaaggtccggtgggagatcgtggagacaaaggtttcccaggt
tttcctggtcgacccggtgtagctgggctgaggggagaaccaggtgcagtccttggggcc
ctcaaaggtcagcgtggtttacctggcgatgatggtcaggcaggctatcatggagttcca
ggaacacctggccggccaggcgactgtagtccaacaggagatggaggacaggtggatgta
acaggtccttgcagtgcaattccaggacctcctggattacctggacttccaggacccagt
ggattaccaggtttcccaggtcttctagggcaaaaggggcaacagggtccttttggagta
gaaggagagaaaggagaaacaggagatcaaggaataggtggccgtcctggaccaccaggt
tttgctggcccccgtggagacttgggatttcctggcagcaaaggttcagttggagtccct
ggtttgcccggtgtgcccggcaggcacggggcacaaggtggaaagggtgttcacggagaa
gtcttgggagcatcaccaggagcccgtggtgacccagggctgcctgggcttcaagggaat
aaaggcctgtctgggggccaaggagtaccaggccatccaggaacgattggcatgcctggc
atgattggcttcaaaggtgacagtggccctgcaggcctgcagggggaggaaggcaggcct
gggccagcgggcaaatatggctaccctggtgaccctggacgagcaggtccacccgggcct
catggtaccattggacagccaggtatcactggagagaggggaactgaaggagactcgggc
cctccaggtccaatcggattaaaagggatccctggggagtacggtaataatggtgtcatt
ggagagtatggctcaccaggtaacccaggaccgataggagcagatggatgcccaggagtc
ccaggaatgaaaggatacaaaggatctcccggcatgtcgggttttgaggggaccaggggt
gatctaggggtgaaaggcctaagtgggctgagaggagaacctggagtgccaggcgaattt
ggccaaaaaggagggacaggcaaaagtggagagaaaggtgatcgtggtctgaggggggca
cctggggataagcctaaaatccctgcccagatgattgttgacatgaagggtgccaaagga
gagcgaggatttataggagaacaaggtttcaccgggccgagaggttttaaggggttcccc
ggtgtacccggtagtgagggagttcatggttttcctggagatcccagcaatgagaaagga
taccaaggagatccgggtgcacaggggttgccagggataaaaggaatgcctggcctaact
ggaaatcggggaattactggttttcaaggaatgtctggcaacaagggaatcaaaggaagc
cctggtgcgtatggtgcatcaggagacccaggaagaaagggaggcaaaggtgataaaggc
cctcgtatagaccttccagggtctacgggattgagaggagaggaggggtttcaaggagtg
ccaggccagacaggattaattggacagactggggacaggggtaccattggttttgatggt
attggagggaaaaagggagattctggtgatccaggaatatatggattccaaggctccgat
gggcagaacggaactcctggtaatcaaggtcaaaaaggctttcctggaacacctggaaat
caaggacatccaggcttccctggcttcccaggaaacaaaggtttccctggcctgaagggt
ctttatggattacatggactgaaaggacaaaagggtgtcccaggaacaccaggtctggat
atcattggaccagctggggagcctggagccaaaggagagaggggagagagtggtgacccc
aacaaccagtcaggtgttccaggcacagcgggtttgaaaggcttccaaggacctctaggt
gaccatggtcaacctgggcctccaggattccgtggccccataggaccagatgggacccca
gacagacaaggacccagtggggaccatggctttataggagttaaagggtaccaaggtttc
cctggacccagaggatttcctggcgtggatgctcccccaggagaaaagggcatatccgga
tttaacgggtttcctggagttcctggaaggaaaggattcaaaggagatcaaggttcattt
ggacagaaagggcctaatggtgtttctggaaagaaagggataaaaggagagcaaggattg
atgggagttcctggtatgattggtgtgaaaggagaaagaggaccagttggtccaaaagga
aacactgggcccccaggttttcaagggtttccaggcaaccagggtcctcctccacttcca
gtccgaattccaggagagaggggccctccaggtccacagggtatccgaggaccgaagggg
gtgaccggggaaccagggccacagggtcccccaggagatggaggtttcataggacccagg
ggacagaagggcatgcctgggattggtggtacaccaggaacagctggattccgtggaaag
gtcggacacatgggccaccccggtctgcaaggcatggaaggtcaccgtggcaaccctggg
atccctgggttacctggtatgcctgggcgcagtgtcagtgtgggctacttgctggtgaaa
cacagtcaatcagatcagacgccaatgtgtcctgtgggtatgaataagctgtggaacggc
tacagtctgctgtacctcgagggccaggaaaaggcccacaaccaggatcttggtttggct
ggctcttgcctcccacggttcagcaccatgcccttcctgtactgcaatcctggagacatt
tgttactatgccagcagaaacgataagtcctactggttgtcaacaactgctcctcttccc
atgatgcctgtagaagagggagagatcaaaccgtacatcagccgctgctcagtatgcgaa
gctccatcagttgccatcgcagtccacagccaggacatcaccatcccacagtgtcctgtg
gggtggcgcagcctgtggatcggttactcattcctcatgcatacagcagcaggaaatgaa
ggcggaggtcagtccttgtcatcccctggctcctgcctggaggacttccgcacaacacca
ttcatcgagtgcaatggggccaaaggcacatgccactactttgctaacaagcacagcttc
tggctaacctccatagatcagtcgttccacactgacccggcatcagagacgctcaaagca
ggccagctcctgtcccgcatcagccgctgccaggtctgcatgaagaacttgtga
DBGET
integrated database retrieval system
