KEGG T06058: 111662674

Seriola lalandi dorsalis (Yellowtail amberjack): 111662674

Entry

111662674         CDS       T06058

Symbol

hmgb1

Name

(RefSeq) high mobility group protein B1

K10802

high mobility group protein B1

Organism

slal Seriola lalandi dorsalis (Yellowtail amberjack)

Pathway

slal03410

Base excision repair

slal04140

Autophagy - animal

slal04217

Necroptosis

Brite

KEGG Orthology (KO) [BR:slal00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    111662674 (hmgb1)
09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    111662674 (hmgb1)
  09143 Cell growth and death
   04217 Necroptosis
    111662674 (hmgb1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:slal03036]
    111662674 (hmgb1)
   03400 DNA repair and recombination proteins [BR:slal03400]
    111662674 (hmgb1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:slal04147]
    111662674 (hmgb1)
Chromosome and associated proteins [BR:slal03036]
Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    111662674 (hmgb1)
DNA repair and recombination proteins [BR:slal03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     111662674 (hmgb1)
   MMR (mismatch excision repair)
    Other MMR factors
     111662674 (hmgb1)
Exosome [BR:slal04147]
Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   111662674 (hmgb1)

SSDB

Motif

Pfam:

HMG_box HMG_box_2 HMG_box_5 NOA36

Other DBs

NCBI-GeneID:

111662674

NCBI-ProteinID:

XP_023272380

Ensembl:

ENSSLDG00000022389

LinkDB

Position

Unknown

AA seq 206 aa
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFE
DLARQDKARYEREMMSYVPVRGGKKKKFKDPNAPKRPPSAFFIFCSEFRPKVKGESPGLS
IGDVAKRLGEMWNGTAAEDKQPYEKKAAKLKEKYEKDIAAYRAKGKTGGGAPGKAPSKAE
KKDDDDDDDDEDDEEEEEDDDDDDDE

NT seq 621 nt +upstreamnt +downstreamnt
atggggaaagatccaaccaagccgagggggaagatgtcctcctatgcatattttgtccag
acctgccgggaggagcacaagaagaagcaccctgatgcttcggttaactttgccgagttt
tccaagaagtgctctgagcgatggaagacaatgtctgctaaggagaagggcaaatttgag
gacctggctagacaggacaaggcgcgctatgagagggagatgatgagctacgttccagtc
aggggaggaaagaagaagaagttcaaggaccctaatgcccccaagagacctccatctgcc
ttcttcatcttttgctcagagttccgccctaaggtgaaaggcgagagccctggtctgtcc
attggagatgttgccaagaggctgggtgagatgtggaacggcaccgctgcagaggacaag
cagccctacgagaagaaggccgctaaactgaaggagaagtacgagaaggacatcgcagcg
taccgcgctaagggcaaaacaggtggcggagcaccaggaaaagccccgtccaaggcagag
aagaaggatgacgatgacgacgacgatgatgaagacgatgaggaggaggaggaggatgat
gatgatgatgatgatgagtag

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