Seriola lalandi dorsalis (Yellowtail amberjack): 111662680
Help
Entry
111662680 CDS
T06058
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03030
DNA replication
slal03420
Nucleotide excision repair
slal03430
Mismatch repair
slal03440
Homologous recombination
slal03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111662680 (rpa1)
03420 Nucleotide excision repair
111662680 (rpa1)
03430 Mismatch repair
111662680 (rpa1)
03440 Homologous recombination
111662680 (rpa1)
03460 Fanconi anemia pathway
111662680 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slal03000
]
111662680 (rpa1)
03032 DNA replication proteins [BR:
slal03032
]
111662680 (rpa1)
03400 DNA repair and recombination proteins [BR:
slal03400
]
111662680 (rpa1)
Transcription factors [BR:
slal03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111662680 (rpa1)
DNA replication proteins [BR:
slal03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111662680 (rpa1)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111662680 (rpa1)
MMR (mismatch excision repair)
111662680 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
111662680 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Extensin_1
SOG2
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
111662680
NCBI-ProteinID:
XP_023272387
Ensembl:
ENSSLDG00000020784
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MSVTLTEGAVEALLKGSHMNNPVLQMLSMRQISNTTGPTRFRLMMSDGQHYWSSFLLATQ
LNKLAEENLLLPNCVCMLTKTITNTLADGRHVVVVMGMDILQSAEETGGKIGNPTPFNTD
EKSSSPQKFASSTSASPSPPSAAVPGPSYVNNSTAHCPPRGRGSGFVGKSPMQASPMKAS
PSKFSPMQASPMKASPSKFSPMKASPSKFSPMKASPSKFSPMKASPSKFSPMKASPSKFS
PMKASSSSSPGSSAKVIPIASLNPYQSKWTIRARVTNKSNVRTWSNSKGEGKLFSFDIVD
ESGEIKITAFNKEVDKFFSLVEQGKVYYISKATLKVANKQYTTLKNDYEMTLHAHSSIVP
CDDSQDVPTLHCDFVPIAELENIDKDSIIDVIGVCKSVEDVSRITTKTSREVSKRALNLI
DTTGKVVAVTLWGEEAEKFDGSGQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAF
RLRAWYDRTGYALHSQSLTETRSVGSGAKMNWKTLSDVKNEHMGQGEKADYFSCVATVLY
VRKENCLYQACPSADCNKKVIDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVT
CFQETAEVLLGHSAETLGELRDTDETAFDEVFQRTNFTEHIFKNRVKLETYNDESRVKVT
VMEVQPIDHREYSRRLLSNIRKLSS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttacactcacagagggggcggttgaagccctgctcaaaggctcacacatgaac
aatcccgtgctgcagatgctgagcatgcgtcaaatcagtaacaccacaggcccaaccagg
ttccggcttatgatgagtgacggtcagcactattggtcttccttcttgttggccacccag
ttaaacaaactggcagaagagaacctcctgttaccaaactgtgtgtgtatgctgaccaag
accatcaccaacacattggcagatggcaggcatgtggtggttgtgatgggcatggacata
ttgcagtcagctgaggaaactggagggaagataggaaatcccactccatttaatacagat
gaaaagtcgtcatctccgcagaagtttgcctcaagcacctctgcctcaccgagccctcca
tcagctgcagtacctggaccctcctatgtcaacaacagcacagcccattgtcctccccga
ggccgtggaagtggttttgtgggaaagtcgcccatgcaggcttcacccatgaaggcttca
ccctcaaagttttcacccatgcaggcttcacccatgaaggcttcaccttcaaagttttca
cccatgaaggcttcaccttcaaagttttcacccatgaaggcctcgccctcaaagttttca
cccatgaaggcttcaccctcaaagttttcacccatgaaggcttcaccctcaaagttttca
cccatgaaggcttcatccagctcatctccaggttcttcagctaaagtgattccgattgct
tccctcaacccctaccaaagcaagtggactatcagagcccgagtcaccaacaagtccaat
gtccgcacctggagtaactcaaaaggagagggcaagctcttctcctttgacatagtggat
gagagtggagaaatcaagatcacagccttcaacaaggaggtggacaagtttttctctcta
gtggagcaaggcaaggtgtactacatctccaaggctacactgaaggtggccaacaaacag
tacaccacgctgaagaacgactacgagatgaccctccatgctcattcatccattgtaccg
tgtgatgacagtcaggacgtccccacgttgcactgtgactttgtgcccatcgcagagctg
gagaacatagacaaggactccatcattgatgtcattggagtgtgtaagagtgtggaggat
gtatcccgtatcaccactaagaccagcagagaagtctccaagagggccctcaacctaata
gacacaactggcaaagtggtggcagtcacactgtggggagaggaggcagagaagtttgac
ggctcagggcagcctgtggtcgccatcaaaggagctcgcttgtctgattttgggggcaga
tctctctctgctttgttcagctcaacagtcatggtcaacccagacataccggaggccttt
agattgagggcctggtatgaccggacaggctatgcgctccatagccagtccctgacagag
acgaggtcagtgggcagcggagcaaagatgaactggaaaacactgagcgacgtgaagaat
gaacacatgggacaaggagagaaggcagactatttcagctgcgtggcgacggtgctgtac
gttcgtaaggagaattgtctgtaccaggcctgtccatctgcagactgcaacaagaaggtc
atagaccaacagaacggactgtaccgctgcgaaaagtgtaaccgagagttccccaacttt
aaatatagactcctactttctgccaacttagcagacttcggggataaccagtgggtgaca
tgcttccaggagacagctgaggtcctgttgggtcacagtgcagaaacactgggggagcta
agagacacagacgagactgcatttgatgaagtcttccagagaactaactttacagagcac
atctttaaaaacagagtcaagctggagacgtacaatgatgaaagtcgagtgaaggtaaca
gtaatggaagttcaaccaatcgaccacagggaatacagcaggagactcctcagtaacatc
cggaaattgtcaagctga
DBGET
integrated database retrieval system
