Seriola lalandi dorsalis (Yellowtail amberjack): 111663337
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Entry
111663337 CDS
T06058
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111663337
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111663337
09142 Cell motility
04820 Cytoskeleton in muscle cells
111663337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111663337
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111663337
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111663337
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111663337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111663337
NCBI-ProteinID:
XP_023273269
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MEASSGPRRRIIPLLVLLLCCSAAPGHAERACHCNGKSLCHCDGVKGQKGEPGYRGEDGL
PGMVGYPGNEGHQGPLGEKGEQGPAGSPGLKGSRGLPGKPGFPGPPGLPGLPGHEGPIGQ
SGFPGCNGTKGDVGYPGFPGVPGAAGLRGRPGLRGTKGESLVYPITQEIKGATGPQGPDG
EKGLRGDPGQLGLTGPAGPSGIPGRLGLPGLQGEKGQEGPSPVIPGPRGLKGDRGPPGIP
GQKGIKLYAEGPKELKGEPGDSGDKGCLGPPGVRGRLGVKGQKGERGDPGSLGKQGKDGL
IGELGSQGDPGDRGYLGPPGIDGARGEKGELGPPGQPGEMVWNHRFLKGTLGDPGPHGPP
GAPGKRGLIGFPGLQGEPGVAPIGPPGPQGQPGLTGPKGELGEPGPIIIGPQGQTGVPGG
QGAEGEPGEPGIPDFVLGDVGLPGPKGPPGLLGLPGTRGQNGQTGEKGEMCSVCPVVSAA
PGPPGKPGEPGENGLLGSDGFQGPKGYTGVRGIRGPPGQQGPFGFPGIPGQPGPVGDPGV
MERVGQKGEEGLLGEPGPPGLEGADGLQGVPGLKGVPGQKGNPGPPGLKGDRGPIGDTGP
RGLIGQRGPPGPSGIGAPGPPGPQGNVGVLGQRGSPGKPGEKGAPGKTETNPGEPGQKGE
KGLSGNPGPEGGTGPPGAPGSVGPIGEKGDKGFSVQGPPGFPGVKGLKGFPGAPGLSSFG
IKGRAGPSGPPGMPGPKGDKGMGFPGQQGQSGPQGEDGSVGPQGIPGTQGVDGVPGRPGQ
DGPPGPNGHSGLDGVPGPVGIVGLCLAGAPGPDGEQGRMGVIGFTGARGSKGVQGDPGLL
GLGAIGRQGPYGAPGFNGPPGPVGVGGLKGLKGTNGEPGSPGTRGDMGPPGPLGRPGDDG
KPGETGQPGPKGQMGVDGVSGSQGPPGPQGDRGEPGPKGIQTFVEVYGDPGDPGDTGPIG
FTGTKGEKGLPGPQGSDGTNGIPGNAGPPGLPGDPGRDGQKGPPGPSGLPGNPGDMGQPG
VKGEKGCAGPCGIPGSDGKPGSGGLKGVKGEPSPPGPGSTGCTGEKGNPGCPGPLGTKGK
PGDLGNFGPPGDCGPCGPKGHSGPPGCRGTPGSPGEKGSDGPPGQNGPLGPTGLPGNKGA
PGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGIGPRGSEGEKGQPGCAGEKGPPGPCGPP
GPTGPGGNPGCSGPPGPPGPPGCIGREGICTEGDKGANGHPGGHGPKGPPGSKGPPGPPG
PGNKGEKGSKGATGTAGPPGCSGEPGPQGKPGDDGPRGLTGYKGLTGETGVTGPVGLKGD
EGSQGYPGSQGPPGPPGRRGLKGKDVSREVRLIPGDKGFPGDQGTPGQRGTPGLRGRPGR
PGVKGRGGQAGKKGPGGRPGLKGEQGDRGFPGPQGLAGLRGQAGAKGVAGPPGPCVDAPE
KDGFLFTRHSQNLLVPKCPAGSNEVYSGYSLLFINGNNRAHGQDLGTLGSCLPLFTTMPF
LFCNTDSTCRYASRNDYSYWLSTNETLPGSVPFISGQSLESYISRCTVCEARANVIAIHS
QTSSIPDCPSQWDRLWFGYSFVMETGVGAEGSGQPLASPGSCLEHFRKIPFIECHGRGTC
NYYTDSYSYWLAALNPSDMFSKPKPQTDNGDFPGSLISRCQVCMKRL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atggaggcttcgagcggcccgagacggaggattatcccgctgctggttctgctgctctgc
tgttccgccgctccgggacatgccgagagggcgtgtcactgcaacgggaagtcgttgtgt
cactgtgatggagtcaaaggtcaaaagggtgaacctggttaccgtggagaagatggactt
cctggaatggttggataccctggaaatgagggtcaccaggggccactaggagagaagggt
gaacaaggaccagcaggaagtccaggactgaaaggctctcggggtcttccagggaaacca
ggtttcccaggacctccaggactgccgggacttcccgggcacgaaggaccaattggacaa
tctggattcccaggatgcaatgggacaaagggagatgttggatacccaggattccctggg
gttccaggggctgctggccttcgaggtcgacctggactgcgaggtacaaagggagagtca
ctggtctaccccatcactcaggaaattaaaggagcaacaggaccacaaggaccagatgga
gaaaaagggctaaggggagatccaggtcaactaggactaacaggaccagcaggaccctct
ggaattcctggaaggttggggttgccgggattacagggagagaagggtcaggagggaccc
agtccagtgatcccgggtcctcgaggactgaagggtgatcgtggacctccagggattcca
ggacagaaaggaatcaaactgtatgctgagggacccaaagagctgaagggagaaccaggt
gactctggagataaaggttgtcttggacctcctggtgtgcgggggagactgggggtgaaa
ggacagaagggagaacgaggtgaccccggctcactgggtaaacaggggaaggacggactc
atcggagagctgggatctcagggtgacccaggggatcgtgggtaccttggtcctccaggt
attgatggagccaggggggagaaaggtgaactaggtcctccaggtcaaccaggagagatg
gtctggaatcacagattcctgaagggcacccttggtgaccctgggccccatggaccccca
ggagcccctggaaaacgaggactcattggttttcctggactgcagggcgagccaggtgtg
gctcctattgggccaccaggaccccaggggcaacctggtttgactggacccaaaggagaa
ctaggagagccagggcctatcatcatcgggccccaaggacagactggagtcccaggaggt
cagggagctgaaggagaaccaggagaaccaggaatcccagacttcgtgctaggagatgtt
ggtcttccaggacctaaaggtccaccaggcctgttgggacttcctgggaccagagggcag
aatggacagacaggtgagaagggtgaaatgtgctcggtctgtcctgttgtttctgccgca
cctggacctccaggtaaaccaggagaaccaggtgaaaacgggctgctaggttcagatggt
tttcaaggacccaaaggttacacaggggtcagaggtatcagaggaccacctggtcaacag
ggcccctttggtttccctggtatcccggggcaaccaggacctgttggtgacccgggggtc
atggagagagtggggcagaagggtgaagaaggactcctgggggagccaggaccaccaggt
cttgagggggcagacggacttcaaggagtaccaggactgaaaggtgttccgggacagaaa
ggaaaccctgggcctccaggactgaaaggtgacaggggcccaatcggggacactggtcct
agaggactgataggacagaggggacctccaggaccttcaggtattggcgctccaggacct
ccgggacctcaaggcaatgtgggagtcctgggacagcgaggaagtcctggaaaaccaggt
gaaaagggtgctccaggtaaaactgaaacaaacccaggagaaccaggacagaaaggagag
aaaggtttatctggaaacccaggacctgaaggtgggacaggacctccaggtgctccagga
tctgttggtccaattggagaaaaaggagataaaggattctctgtgcagggccccccaggc
ttcccaggggtgaaaggactcaaaggctttccaggagcacccggtttatcaagttttggt
atcaagggacgagcagggccatcgggccccccagggatgccgggtccaaagggggacaag
ggaatgggtttcccgggccagcagggtcagtcaggccctcagggagaagacggttctgtg
gggccccaaggaatccccgggacccaaggagtagatggagttccaggacgtccaggacaa
gatggaccaccaggacccaatggtcatagtggtctggatggtgtacccggccctgttggt
attgtgggactctgtttagcgggagctcctggacctgacggagagcaaggacggatgggc
gttattggattcacaggagcccgcggctcaaagggggtgcagggtgatcctgggttgctg
ggcttgggagctattggacgtcaaggaccatacggggcaccagggtttaatggacctcca
gggccagtaggagtaggaggactgaagggcctgaaagggaccaatggggagccaggaagc
ccaggtaccagaggggacatgggtcctccaggacctcttgggcgtccaggagatgatgga
aaaccaggagagacaggacaaccaggaccaaaaggtcagatgggagtagacggtgtcagt
ggttctcaggggcctcctgggcctcaaggggacagaggggagcctggaccaaaaggaatc
caaacttttgttgaggtgtacggagatcctggagaccctggagacactgggcccataggt
ttcactggtactaaaggagagaagggcctcccaggacctcagggttctgacggcaccaat
ggcatacctggaaacgctggtccaccaggacttcctggagaccctggcagagatgggcag
aaaggtccacccggtccctctggtctccctggtaacccaggagatatggggcagccaggt
gttaaaggtgagaaaggttgtgcaggcccttgtgggatacctggttcagatggaaaacca
ggatcaggaggacttaaaggtgttaaaggagaaccgagtccacctggaccaggatctaca
ggatgtacaggagagaaggggaatccaggatgtccaggacctttaggtacaaaggggaaa
ccaggagaccttgggaactttggtcctccaggagactgtggcccctgtggccccaaagga
cactctgggcctccaggatgcagaggtactcctggatctcctggtgaaaaggggagtgat
ggtcctccaggacaaaatggccctctaggacccaccggtctcccaggtaacaagggggca
cctggagatcctggtccagctggtcccagaggaaatcagggacaagatgggatacctgga
ccccctggagagaaaggagccatgggagctccaggaattggaccccggggctcagagggg
gagaaaggtcaaccagggtgtgctggagagaagggtcctcctggtccctgtggccctcct
ggtcccactggtcctggcggaaacccaggttgttctggaccacctggaccccctggtcct
cctggttgtattggccgggagggaatctgcactgaaggagacaaaggagcaaatggacac
cctggaggacatggaccaaaaggtccgccgggcagtaagggtcctcctggtcctccaggt
cctggtaataaaggagagaagggctctaaaggagcaacaggtaccgcaggaccaccgggc
tgctctggtgagcctggtccacaaggaaagccgggtgatgacggaccccggggcctaact
ggatacaaaggcctgacaggagaaactggtgtcacaggacctgttggtttgaagggagat
gagggatctcaaggttaccccggctcacaaggacctccaggaccacctgggaggagagga
ctgaaggggaaggatgtatccagggaggtgaggctgattccaggagacaaaggctttcct
ggagatcagggaaccccaggacaaaggggaaccccagggctccgtgggagacctggacgt
ccaggtgttaagggcagaggagggcaggctggtaaaaaaggaccaggaggtcgtcctgga
ttgaagggggaacagggagaccgaggattccctggaccacaaggtctggcaggtctacgt
ggtcaagctggtgctaaaggagttgcaggtccaccgggtccctgtgtggatgcaccagag
aaggacggcttcctgttcaccagacacagtcagaacctcctggtcccaaaatgccctgca
ggatccaatgaagtgtacagtggatactccctgctgttcatcaatggaaacaaccgagct
catggacaagacctgggcacattaggcagctgtctccctctctttaccaccatgcccttc
ctgttctgcaacactgacagcacctgtcgctacgcctcccgcaacgactactcctattgg
ctgtccaccaatgaaacgctgccaggcagcgtcccattcatctccgggcagtcactggag
agttacatcagccggtgtactgtatgtgaggccagagccaatgtgatcgccatccacagt
cagaccagttccattcctgactgtccttctcagtgggatcgtctctggtttggatactcc
tttgtgatggaaacaggagtgggggcagaggggtcaggtcagcctctggcctcacctgga
tcctgtctagaacacttcaggaagattcccttcattgagtgtcacggcagaggaacctgc
aactactacaccgactcctacagctactggctggctgctctcaaccccagtgacatgttc
agtaaaccgaagcctcagactgacaacggagattttccaggcagtctgatcagccgctgt
caagtctgcatgaagaggctgtga
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integrated database retrieval system
