Seriola lalandi dorsalis (Yellowtail amberjack): 111663383
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Entry
111663383 CDS
T06058
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111663383
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111663383
09142 Cell motility
04820 Cytoskeleton in muscle cells
111663383
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111663383
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111663383
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111663383
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111663383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111663383
NCBI-ProteinID:
XP_023273317
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MAGIMTLTPPPLRMTWEGEQDVEVQGKMQIRLRSGNQSTQGPSSRRPTGAGLVDSSLTSG
GRTRSLVQAAGNRLEAYRPDASIWFLDAWAEGFTAELLGCPQVSLGGYREAWKLILRAAD
DHQRHSIGASSLAEIQLEAESECLLMMLTAPPAALGGDHTEPCAGRDCSTCQCFPAKGAR
GPPGGLGQQGHQGPPGFPGPQGPPGEKGQRGDEGPTGAAGLKGDLGSVGVLGFPGLEGVP
GHPGPAGGPGFPGLDGCNGTRGQRGDPGLPGEQGRDGEPGFPGLKGFPGDPAVYFIQYPG
VPGDVGPPGLPGLQGEQGLPGSEGGVGSDGLDGTNGLPGLPGSRGPPGEKGRSLPGQKGD
EGDQGLQGPPGPFEYVDPPEDLYIKGEKGHRGIKGVCGAEGLRGMDSLPGIKGEKGVPGF
PGPRGFSGIPGLLGERGFKGIQGSPGLPGLIGREGPKGMMGDPGPKGLPQEVDVTHTGDV
GGSGPPGLSGPEGDMGLMGMHGPPGAPGLSIPGPAGIVGPSGVPGSKGERGDPGPVYKDG
PTPGEPGKPGYPGFRGLKGEPGSPGRYCLPGAPGESGDLGQQGIPGDQGFPGFKGSNGAC
NCGPPLILRGPPGPVGDSGNQGFPGVPGAPGQRGEKGLPGDTGDTGEQGLGGFPGVKGVK
GQKGDFIVVDRIGEKGNIGQYGPPGRQGFSGRRGRDGLPGAPGNPGPQGDSFTSSPGDRG
FPGFLGPKGPSGPPGSPGADVGGAIGQRGPPGEPGAPGILGPPGPKGATGDTLPCVPRNP
GPPGEKGDTGNAGYTGLPGPSGFRGITGPDGIKGEKGQSGLPGLPGRQGPPGLVGDTGEE
GSEGFSYGGDPGSPGIPGYPGLRGPAGDSDVGPSGPIGFPGPLGSQGPKGVPGPPGIDGV
QGVQGLAGGPGANGQRGQDGAPGITGPPGPSPGLCDIGKPGSRGPFGPQGPTGPPGFQGE
KGETGEVGPPGFGLQGPLGKPGSPGVPGYPGPQGPSGPIGDSGLPGPDGQKGLLGPQGTY
GVQGASGQTGATGAPGWTGERGFNGRDGAQGCDGPKGEKGCKGPPGPPGDTMCVPIKGET
GKPGPAGIKGFPGPRGSKGVQGATGKPGCPGSNGPPGIVGRPGLPGSCGMSGSPGPPGRQ
GPPGLIGFPGPTGDQGDPGCPGKSGEPGHQGCTGQKGDKGDSVGSPGLPGNRGPPGDFGP
TGPPGPRGDPGRPGFLGPPGQKGCKGDPGHHGDPGSPGVTGPSGPGGRPGCPGLPGKAGA
DGPPGAQGCSGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVQGPPGLQGLPGDKGPPGPS
GPSGPSQPGQPGPNGPPGPKGPPGSFGPPGKRGPNCQNPVSGPCGDPGCSGQDGEPGCAG
DMGDPGPNPPVLGDEGDNGDSGCRGQIGSKGSLGPKGLPGNPGDCGVKGMKGSQGLMGLP
GNQGPKGCTGQRGPPGPKGLDGPVGPKGERGGVSPCPTYPPPQPGPPGPPGPPGRLGEAG
LQGENGLKGFKGMRGNPGSLGPIGFVGPPGRDGNQGEPGLQGEQGVDGAKGDAGPVGDRG
SPGISRNLNSGFLLVRHSQSKNIPTCPLNMRPLWNGYSLLYLEGQEKAHTQDLGQAGSCM
QVFSTMPFSSCNMGACSYASRNDKSYWLSTTAAVPSIPVGGPSIEDHISRCVVCEAPSAP
VALHSQTADQPDCPPKWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQ
GPRGTCHYFANIYSFWLTRVDTSTSTSNKPSTTLTEAWQQRGNIGRCNVCMRK
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaataatgacactaaccccccctcctctgaggatgacgtgggaaggagagcag
gatgttgaggttcagggcaagatgcagatcaggctgaggagtggaaaccagagcacccag
gggccctcgagtagaagaccaacaggagccgggctggtggacagcagcttgacatctggg
ggcaggacacgcagtctggtccaagctgcaggaaataggctggaggcttacaggcctgat
gctagcatctggttcctggatgcttgggccgaaggcttcacagcagagctgctgggctgc
ccccaggtgtctctgggaggatacagggaagcctggaaactcatcctgagggctgcagac
gaccaccagcgtcacagcatcggagcgtcctcattggctgagatccagctggaggcggag
tcagagtgcctcctgatgatgctgacagctcctccagcagcgctcgggggtgatcacaca
gaaccgtgcgctgggcgggactgctccacctgccagtgttttccagccaaaggagcaagg
ggtcctccaggtggtctggggcagcagggccatcaggggcccccaggattcccaggtcct
caggggcctccaggagaaaagggccaaagaggagatgaggggccaacaggagctgcagga
ctgaaaggagacctgggcagtgtcggtgttcttggttttccgggtttagagggagtcccg
ggacacccgggtcctgctggaggtccaggttttccaggtctggatggatgtaatgggacc
agagggcagagaggagatcctggacttcccggagaacaaggacgtgatggagaaccgggt
tttccaggactgaaaggatttccaggagatccagcagtgtacttcattcagtaccctgga
gtacctggagatgtggggccccctggtcttcctggactgcagggtgagcagggtctccct
ggttcagaaggaggtgtgggttcagacggactggatgggaccaacggtctccctggtctt
cctggttccaggggtccacctggagaaaaaggtcgatctctccctggacagaaaggagac
gagggggatcagggcctccaggggcccccggggccgtttgagtacgtcgaccctccagaa
gacctgtacatcaaaggagaaaagggccatcgagggattaaaggagtctgtggagctgag
ggactgcggggcatggactctctcccaggaatcaaaggagagaaaggggttcctgggttc
cctgggcccagaggattttctggcatccccggtctgctcggagagagaggattcaagggg
attcaaggaagtccaggcctcccaggtctgattggacgagaaggtcctaagggcatgatg
ggagatccaggtcctaaaggcctccctcaggaggtagatgttacacacacaggtgatgtt
ggaggcagcgggccccccggactgagcggccccgaaggagacatggggctgatgggaatg
catggtcctcctggagcccccggcctctccatacctggtccagcaggtattgtaggtccg
agcggagttccaggatccaaaggggagagaggagatccaggtccggtctataaagatgga
cccacacctggagaacctggaaaaccaggatatcccggattcagaggattgaaaggagaa
ccaggaagtccaggtcgttactgtcttcccggggccccaggagaatcaggagacctgggt
caacagggaataccaggggatcagggattcccagggtttaaaggctctaatggtgcctgc
aattgtggccctcctttaatactaaggggcccccccggccctgtgggtgactcgggaaat
caggggtttccaggagtcccaggggccccagggcagagaggagagaaaggtttacctgga
gatactggagatactggagaacagggtctgggtggatttccaggcgtcaaaggggtaaag
ggtcagaaaggagatttcattgtggtggatagaataggtgagaaaggaaacattggccag
tacggccccccaggcagacaaggattctctgggagaagaggacgtgatggactccctggc
gcccctggtaaccctggtccccagggtgacagtttcaccagctctcctggagacagaggc
ttcccagggtttttagggccaaagggaccatcaggacctccaggctctccaggagcagat
gtaggtggagcaataggacagcgtgggccccctggggagccgggagctccaggaatcctg
ggccccccagggccaaaaggggctactggtgacactctgccctgtgtacccagaaacccc
ggccccccaggagagaagggagacactgggaacgcaggttacacaggactcccaggtcct
tcaggttttcgtggcatcactgggcctgatggaattaaaggagaaaaaggacagtctgga
cttcctggactacctggacgacaagggcctccaggacttgttggagatactggagaagaa
ggatctgaaggcttcagttacggaggagatccaggctctccagggattccaggctatcct
gggctcaggggcccagcaggagactctgatgtcggaccctcaggacccattggcttccca
ggaccactgggctctcagggacctaaaggagttcctggtccccccggcatagacggagta
caaggagtccagggtctggccgggggccctggagcgaatggccagagagggcaggatgga
gccccaggtatcactggtcccccaggtccttcacctggcctctgtgacatagggaaaccc
ggttccaggggcccctttggccctcagggacccactggacccccaggttttcagggagag
aaaggtgagactggggaggtgggtcctccaggctttggccttcaaggccctttagggaaa
ccaggttctccaggtgtcccaggatacccggggccccagggcccctctggccccattgga
gactctggactgccagggcccgacggtcagaaaggtctgttgggaccccaaggcacgtat
ggagtgcaaggggcttcaggacagactggggccactggagcgccaggatggacaggagag
agagggttcaatggacgagatggagctcaaggatgtgatgggccaaaaggagagaaggga
tgtaaagggcccccagggcctccaggagataccatgtgtgtcccaatcaaaggagagaca
ggaaaaccaggacccgccggaatcaagggtttccctggaccccgaggaagtaaaggtgtg
caaggcgctactggtaagccagggtgtccaggcagcaatggccccccaggtattgttgga
cgcccaggactgccaggttcctgcggtatgtcaggatcccctggaccacctggacgtcaa
ggacctccaggactcattggcttccctggaccaactggagatcagggtgacccaggatgt
ccagggaaatctggagagcctggtcaccaaggatgtacgggacagaaaggtgataaagga
gattctgttggttctcctggcctacctggaaacagggggcctcctggagactttggcccc
acaggacctcctggacctcgaggagatcccggaagacctggtttcctcgggcctccggga
cagaaaggatgcaaaggagatccaggccaccatggagacccaggttcaccaggtgtgacc
ggtccttcaggtcccggaggtcgtccaggttgtccaggtcttcctggcaaagcgggtgct
gatggtcctccaggagcgcagggctgctcgggactccaaggtcctcctggaccactggga
cttcatggactggatggactgaaaggagtgaaaggggacatggggaccagaggtctgggt
gtgcagggtcctccgggtctccagggtcttccaggggataagggtcctccaggtccttca
ggtccctctggtccatcccagcctggacaaccaggacccaacggccccccaggacccaaa
ggacctccaggtagttttggacctccaggtaaacgtggacccaactgtcaaaatccagtc
tcaggcccatgtggagatcctggttgttctggacaagatggagagccaggttgtgctggg
gacatgggggatccaggtcctaaccctccagtacttggggatgaaggggacaatggggac
tcaggatgccggggtcaaattggctcaaagggatctctgggacccaaaggactgccaggc
aaccctggagactgtggagtgaaaggtatgaaggggtcacaaggtctgatgggactacct
ggtaatcagggccctaaaggttgtactggtcagagagggcctccaggaccaaaaggactt
gatggaccagtgggtccaaagggagaaagaggcggagtctccccgtgtcccacttaccct
cccccacagcctggccccccgggcccccctggcccccctggtagacttggagaggctggc
ctccagggagaaaatggcctgaagggattcaaaggtatgagggggaatcctggatctttg
ggaccaataggctttgtggggcccccaggtcgagacggaaaccaaggagagccaggcctg
cagggggagcaaggagtagatggagccaaaggtgatgctggtccagtcggtgaccgcggt
tctcctggaatatccagaaacttgaactcgggcttcctgttggttaggcacagccaatca
aagaacattcccacctgtccattaaacatgaggcccctgtggaacggatacagtctgctc
tacttggagggccaggagaaggctcacactcaggacctgggtcaagcggggtcgtgtatg
caagtcttttccaccatgccgttctcctcctgtaacatgggagcctgctcttacgccagt
cgtaatgataaatcctattggttgtcgacaacggcagcggtacccagcatacctgtgggc
ggaccctccattgaagatcacatcagccgctgtgtagtgtgtgaagccccctccgcacct
gtcgcactgcacagccagaccgccgaccagccagactgcccccccaagtggacgagcttg
tggaccggatactccttcctcatgcatacaggtgccggtgatgagggcggcggccagtct
ctgacatcatcaggtagctgtctgacagacttcagggcccagcccttcgtggagtgtcag
gggcctcgaggaacctgccactactttgccaacatctacagcttctggttaaccagagtg
gacacgagcacctccacttccaacaagccctccaccacgctgaccgaggcctggcagcag
agggggaacatcgggaggtgcaacgtctgcatgaggaagtga
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