Seriola lalandi dorsalis (Yellowtail amberjack): 111664082
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Entry
111664082 CDS
T06058
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03030
DNA replication
slal03410
Base excision repair
slal03420
Nucleotide excision repair
slal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111664082 (rfc1)
03410 Base excision repair
111664082 (rfc1)
03420 Nucleotide excision repair
111664082 (rfc1)
03430 Mismatch repair
111664082 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slal03032
]
111664082 (rfc1)
03400 DNA repair and recombination proteins [BR:
slal03400
]
111664082 (rfc1)
DNA replication proteins [BR:
slal03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111664082 (rfc1)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111664082 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_5
RuvB_N
AAA_17
AAA_14
BRCT_2
AAA_33
AAA_7
AAA_18
AAA_16
NTPase_1
nSTAND3
RNA_helicase
AAA_19
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
111664082
NCBI-ProteinID:
XP_023274317
Ensembl:
ENSSLDG00000001635
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MDIRRFFAPTAGKAAVQKPAPNGNLRAEEEKKKKKPQSPDEVVKQKKKETKKVKSPKTDE
KRKDSEKKRKKHAVIESDSEEEPVRKSKKSPKEKQKTSKTSPPPKKDPVQYVSETDSDSD
NFQSLKKVSKTKKNDTSKPTKSDAGSPRSGAETPVKPFSTQGKTGVKSPPKPVTPKSATP
PQPKKTPTSVFDYFGRGTIQRSDKKLVASTKRKAPTQDTDDLISDEEIARQLQMEEDMEM
EKQVHEDEEFAKTLAMLDEEPQAKKARKGSDEKQAPATIPKKSCTDSAAGSTSSLTKTNR
SVLEDVISPSPKKNPAPGKASSKLAMMKKKDEEKDVGTKGKTPISPTKIKTSPRKEPLTS
SSSDMKFTPKTGTTPTALKTSPKKPESTNTSPDDPEKKKVNSSAYRNYLNRDGPRALGSK
EIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSKKTTYVVQGRDSGVS
KLEKAESLGTKILDEDGLLELIRTKPGKKSKYEIAAEAESTASKTRTPPSRTSKSTPKAQ
KISPSKGNSRSPHTPSPSKTGLAQGYGGKTGAGSTPPGRGSGHTARRGLGLSSSSTCSSS
SPSPTGEDASLLWVDKYRPHSLKTVIGQQGDQSCANKLLRWLKNWHNNQSTASKPAARFG
KFGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAE
SLNNTSIENFYKGTSQTVSTKHVLIMDEVDGMAGNEDRGGIQEMIGLIRSSKIPIICMCN
DRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDVRQ
VIHNLSMWSAKDKVMTYDQCKSDAARARKDMKLGPFDVCRKVFTKGEETAHMSLIDKSDL
FFHDYSLSPLFVQENYLHVRPAAAGGDLKSHLVLLSKTADSISDGDLVDRRIRSGQNWSL
LPTQAIYASVLPGELMRGYMSQFPTFPSWLGKYSSTSKHSRIVQELASHMSLKTFSSRQA
VNLDYLHYLRQALLSPLQRHGAEGAGQAVQLLNDYQLIKEDVDSIMEISVWGGQPDPYSK
LDSKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGGESELGGEDMDNGVQESEDEGEGL
KADAMIKQKKAKATKESKTEKKEESGKGKGKGKGKGKAKK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgactgcagggaaggctgcggtgcagaaaccagcc
cccaatggaaacctgagggcagaggaggagaagaagaagaagaagcctcagtctccagat
gaggtggtaaaacagaaaaagaaagagaccaagaaggtcaaaagccccaaaactgacgag
aaacgcaaggatagtgagaaaaaaagaaagaagcatgcagtcatagagtcagactcggag
gaggagccagtgaggaagtcaaagaaatcccccaaagagaaacaaaagaccagcaagaca
tcaccacctcccaaaaaagatcctgtgcagtatgtctccgaaacagattcggacagtgat
aactttcaatccttgaagaaggtctccaagaccaagaagaacgacacgtccaaaccgaca
aagtcagatgcagggagtcctcgttcaggggccgagactcctgtcaagcccttctccaca
caagggaaaactggggtgaagtctcctcccaaacctgtcacccctaaatcagctacaccc
cctcagcccaaaaaaacccccacctcagtatttgactactttggtagagggaccatccag
cgctcagacaagaagctggtggccagcaccaaacgaaaggctccaactcaggacacagat
gatctgatcagtgatgaggaaatcgccagacagctgcagatggaagaggacatggagatg
gaaaagcaggtccatgaggacgaggagtttgccaaaacactggccatgctggacgaggag
ccacaggcgaagaaggctcgtaaaggctctgatgaaaaacaagcacctgccacaattccc
aaaaagagctgcacagactctgctgctggcagcacaagcagcctcacgaagaccaaccgc
agcgtgttggaggatgtgatcagtccgtctcctaagaagaaccctgcccctggcaaagcc
agctccaaactggccatgatgaagaagaaggatgaagagaaagatgtagggacaaagggc
aaaacccccatttcacccacaaaaattaaaacctctcccagaaaggagcccctcacttcg
tcgagctcagacatgaagttcacacccaaaacaggaacaacacccactgcacttaaaact
tctcccaagaaaccagagagcacaaacacgagtcctgatgaccctgagaagaagaaagtc
aactcttccgcttacagaaactacctcaacagagatggaccacgagctctgggctccaag
gaaatcccgcagggagcagagaactgtctggagggttgtgtgtttgtgttgacgggggtc
ctggagtccatggagagagatgacgccaaatccctcattgagcgctatggaggcaaagtg
acgggcaacgtcagcaaaaagaccacctatgtggtgcagggcagggacagcggagtctcg
aagctggagaaggcggagagtcttggtaccaagatcctggatgaggatggtctgttggag
ctgatcagaaccaaaccaggaaagaagtccaagtatgagattgctgcagaggctgagagc
acagcctcaaagaccaggactccacccagccggacttcaaagagcacccccaaagcccag
aagatttctccctccaagggtaattccaggtcccctcacaccccgagcccgtcaaagacc
ggcctggcacaaggttatggtggcaagactggagctggcagcactccacctgggagaggc
tcaggtcacacggccaggagggggctgggcctttcatcctcctccacctgttcatcatct
tccccctcaccgaccggggaggatgccagtctgctgtgggtggacaagtaccgcccacac
tctctgaagactgtgattggccagcagggtgaccagagctgtgccaataaactgctgcgc
tggctgaagaactggcacaacaaccagagcactgcttccaaaccagcagcaaggtttggt
aagtttggaggagggaaagatgatggatcaggatttaaagctgctctgctctctggtcct
ccgggggttgggaagaccaccactgctgccctggtctgtgaggagttgggcttcagctat
gtggagatgaatgccagctgtactcgcagcaaaaacagtctgaaggaagtcgtcgcagag
tcacttaacaacaccagcatcgagaacttttacaaaggcacgtctcagactgtgagcact
aaacatgtcctgatcatggatgaggttgatggcatggctggcaatgaggaccgaggagga
attcaggagatgatcggcctgatcagaagttcaaagattcccatcatctgcatgtgcaac
gatcgtaaccaccagaagatcaggtcactggccaactactgcttcgatctgcgcttccag
aggccgcgagtggaacagataaagggagccatgatgtccatcgctttcaaagaaggaatt
aaaatcccacctccagctcttaatgaaattatcctcgcttctaatcaggatgtccgacag
gtgatccacaacctgagcatgtggtcagctaaagacaaggtgatgacgtatgaccagtgc
aagtctgacgcagccagagctcgcaaggacatgaaactggggccatttgacgtttgcagg
aaggtgtttaccaagggggaggagactgcccacatgagcctcatcgacaagtccgacctc
ttcttccacgactactcgctatcaccactcttcgtccaagagaactacctgcatgtccgt
ccagcggctgccggtggagatctgaagtcccacctggtgttgctcagcaagacagcggac
tccatctctgacggagacctggtggacagacggatccgctctgggcagaactggtcactg
ctgcctacccaggccatctatgccagtgtgttaccaggggagctcatgagaggctacatg
agtcagttccccacattccccagctggcttggcaagtattcctccaccagtaaacattcc
cgtattgttcaggagctggcctcacacatgagtttaaagacgttcagcagcagacaggcg
gtgaacctggactacctgcactacctgaggcaggcgctgctgagcccacttcagaggcac
ggagcagagggcgccggtcaagctgtgcagctgctgaacgactaccagctgataaaggag
gacgtggacagcatcatggagatcagcgtctggggtggacagcctgacccctattccaaa
ctggactctaaggtcaaagcagctttcacgcgtgcgtacaacaaagaagttcacctgacg
ccgtactccctgcaagctgtgaagaagggccgccgtggtggaggtggtggggaatcagag
ctgggaggagaggacatggacaacggagttcaggagtctgaggatgaaggagaaggtctc
aaagctgacgctatgatcaagcagaagaaggctaaggccaccaaggagtcaaagacggag
aagaaagaagagtctgggaagggcaaagggaaaggcaaagggaaaggcaaggcgaagaaa
tga
DBGET
integrated database retrieval system
