KEGG   Seriola lalandi dorsalis (Yellowtail amberjack): 111667113
Entry
111667113         CDS       T06058                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382  Cornified envelope formation
slal04510  Focal adhesion
slal04512  ECM-receptor interaction
slal04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:slal00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111667113 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111667113 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111667113 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    111667113 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:slal04147]
    111667113 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:slal00536]
    111667113 (col4a5)
Exosome [BR:slal04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   111667113 (col4a5)
Glycosaminoglycan binding proteins [BR:slal00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111667113 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 111667113
NCBI-ProteinID: XP_023278462
LinkDB
Position
Unknown
AA seq 1689 aa
MSKDLKSLRQLTVPLLFLALCVAVQRSDSAACHGCVGSKCDCSGVKGAKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGSQGPGGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGDRGFPGGSGIPGQQGLPGPPGLPGPKGDPGDVISTNRFGEKGAVGLPGL
PGVPGTSGPPGLPGALGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGEPGLPGPP
GPPGQVGEQKRPPETEIQRGDKGDPGLPGPPGDPGYPGPPGPSGGQKGDKGDPGEPGKRG
KPGKDGDPGSPGFPGIKGESGLPGPPGRDGERGLKGDRGYPGPPGVVIGGQTAGRVGPKG
EPGYPGTPGIKGERGPAGLTGPPGTPGRPAIGGSGQPGPPGFPGERGQKGELGPPGISLP
GPPGRPGSPGGQGAQGPPGPPGFSSAGQNCIPGEAGRPGAQGERGYPGETGQKGDKGDTC
VNCFGGTSPIPGPPGPPGSPGFPGTPGGQGIKGDRGFPGTPGALGSPGSPGPQGSPGFPG
EKGDPGDAITVTGIRGEKGDTGFPGSPGLPGLDGRPGRDGVPGSPGPKGAPGSLLVKGER
GLPGEPGSPGLPGDRGPPGSPGFGPQGPSGEKGVQGVSGRPGGPGAPGSKGEPGLTVAEK
GLPGARGQDGEPGLPGGPGSPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGAKGFLGIPG
QPGAPGGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPPGLPGMPGGKGFPGPKGDPGFPGG
PGSPGRSGFDGGTGSKGEPGSPGIPGARGPPGSPSIGSLGAPGATGPPGPMGPPGFPGSN
GEKGDPGAPGLDIPGLPGDRGSPGFPGSPGPIGTPGPPGGPGRDGLPGLPGTKGDMGPMG
PPGPSGGPGGPGGPGAPGLKGESGFPGRDGGPGGPGSKGERGDPGVQGPPGASQAPATPA
KGAKGDPGLPGVPGIPGQKGISGLPGDPGLSGSDGRPGLPGPPGPKGDSGIPGTSGGPGA
PGQKGGMGEMGFPGPSGQKGLPGQPGRPGSSGQPGSPGFPGSKGEPGSAGVGPPGQPGIK
GEPGQPGFPGGSGLKGTPGSPGLPGLPGGPGIKGDPGLPGFQGSPGIPGPKGLDGAPGGP
GLTGAPGRPGEPGRSGAPGQPGEKGQAGRDGIPGPAGVKGEPGPPGFGGPGPSGLPGLPG
AKGDPGLPGPSGNPGFPGTKGEAGFPGSPGSPGNTGPPGPPGQALSGPKGLPGPPGPPGR
AGPSGPPGPAGPEGPRGPQGSGGVKGEKGISGAPGQPGFPGQKGESGVSGFPGSSGLPGA
PGIKGDIGLPGVPGFPGPKGESGIPGGIGLPGDPGEIGLTGPPGDPGIPPAPIVVKGERG
PPGPPGGRGSPGSPGSPGRDGLPGQPGNPGDPGTEGPPGFSGPPGRKGDTGPAGQPGQRG
YPGPPGSDGPQGPPGLPGTASAAHGFLITRHSQGQEVPFCPEGTNIIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGES
IKPFISRCAVCEAPAMVIAVHSQTIQIPSCPTNWEALWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq 5070 nt   +upstreamnt  +downstreamnt
atgagtaaagacttgaagagcctgcgacagctcaccgtgcctctgctcttcctcgccctg
tgcgtcgcggtgcagcgatccgactctgcggcttgccatggatgtgtgggatccaaatgt
gactgcagtggagtgaaaggagccaagggcgaacggggtttcccaggtctcaccggacag
ccaggagtcccagggttccccggacccgaggggccgattggacccagaggagagaagggc
agcgatggatctcaaggaccaggtggcccgaagggaattagagggcctcctggattgcca
ggatttccaggaacaccaggtcttccaggtctgccagggcaggacggacctccaggcccg
agaggagtgccaggttgcaacgggacaaagggtgacagaggttttccaggaggttcagga
atccctggacagcaaggactaccgggtccacctggtcttccaggaccaaagggagaccca
ggcgatgtgatctcaacaaatcgttttggagagaaaggagctgtgggattgcccggattg
ccgggagttcctggcacttctggtccccctggtttaccaggtgcactcgggcctcccgga
cccagaggatatgagggtcgcccaggtcctcctggtcctcctggaccaaagggaaacatg
ggtttgaacttccaaggacccaaaggagagaagggtgaacctggtttgccaggacctccc
ggtcctccaggacaggtgggagaacagaagcggcccccagagactgagattcagagagga
gacaagggtgacccaggacttcccggccctccaggtgatccaggctatccaggacctcct
ggtccctcaggcggccagaaaggagataagggcgatccaggagagccaggcaaacgaggc
aaaccaggcaaagacggtgaccctggttctccaggcttccctggcatcaaaggagagtca
ggcttgccaggtcctccaggcagggatggagagagaggtctaaaaggagatcgtggatat
cctggcccaccaggagtggtgattggcgggcagacagcaggtcgtgttggtcctaaaggt
gagcccgggtaccctggaacacctgggatcaaaggagagcgcggacccgcaggtttgaca
ggacctcctggaacaccaggacgtccagccatcggtggtagtggtcagcctggacctcca
ggtttcccaggagaaagaggtcagaaaggagagcttggtcctccagggatctctttgccc
ggtcccccaggacgtccaggatctcccggtggccagggggcgcaagggccccctggacct
ccgggcttttccagtgcaggacaaaactgcatccctggagaggctgggcgtcccggcgcg
cagggagagagaggttacccaggagaaacaggccagaaaggtgacaagggcgacacctgt
gtgaactgctttggtggcaccagccccatcccaggacccccaggacctcccggatcgcct
ggattccctggaacgcctggtggccagggtatcaaaggagacagaggatttccaggaaca
cctggagctctcggctcgcctggatcccctggacctcaaggttccccaggattccccgga
gagaagggtgacccaggtgatgccatcacagtcactggtataaggggggagaagggtgac
actggtttccccggatcacccggtctgcctggtctggacggacgccccggtcgtgatgga
gtgcctggatctcctgggcccaaaggagctcccggctctctgctcgtgaaaggagaacga
ggactccccggtgagccaggttcccctggtcttccaggggacaggggtcccccaggttcc
cccggctttggacctcaagggccctcaggagagaagggagtgcagggagtctcaggcaga
cctggaggtcctggtgcacctggttctaaaggtgaaccaggcctgacagtagcagagaaa
ggattaccaggagcgagaggacaggatggagagcctggattgcctggtggaccaggtagc
ccaggtcagcccggacaacctggtttccctggtttaccaggagcgaagggtgaccctgga
ctcccaggcatcggactccctggacccccaggagctaaaggattcctaggtatccccggc
cagccaggagctcctggaggaccaggcagaccaggagtggatggacttcccggccagcct
ggatttcctggatccaagggtgagcctggctttggactacctggcccacctggtttacca
ggaatgcctggaggtaaaggtttccctggaccaaagggagatcctggtttccctggcggc
cccggttcaccaggacgatctggatttgatggcggcacaggatccaaaggtgagcccggt
tcacctggtatccctggagctcgtggcccacctggatccccatccattggctcattgggg
gccccaggcgccactggacctccaggcccgatgggaccaccaggattccctggatcaaac
ggagagaaaggagaccccggtgctccaggtctagatatcccaggtctgccaggagacaga
ggaagtcccggtttcccaggttccccaggaccaatcggaaccccaggacctcctggagga
cctggacgggatggcctgcctggactgccgggcacgaaaggagacatgggtcccatggga
cctccaggaccttctggaggaccaggtggcccaggaggacctggtgctcccggacttaaa
ggtgaatctggattcccaggtagagacggtggacctggtggtcccggcagtaaaggagag
aggggagaccctggtgtccagggacccccaggagccagccaggcaccagcaacacccgca
aagggagccaaaggagatccaggactaccaggtgtaccaggtattccaggtcagaaaggc
atctccggtctccctggtgaccccggcctgtcagggtcagatggtcgccctggactcccc
ggaccaccaggtcctaagggagattctggcatcccaggaacttcaggtggtcccggagct
ccaggacaaaaaggcggcatgggagaaatgggatttccaggaccatcagggcagaagggt
ctaccaggtcagccgggacggccaggatcctcaggacagccaggatcacctggtttccct
gggtccaaaggtgaaccaggttctgcaggagtcggaccacctggacaacctggaatcaag
ggtgagccaggccagccagggttcccaggaggctcaggactcaaaggaactccaggatct
cccggtctcccaggtttacctggaggaccgggcatcaaaggtgaccccggcctcccagga
ttccaaggttctcctggtatcccaggtcccaagggtctcgacggtgcgcccggtggtcca
ggtctcactggagctcccggtagaccaggagagcctggacgatcaggagcaccaggacag
ccaggagagaaaggtcaggcaggacgtgatggtatcccaggacctgctggagtcaaagga
gagccaggccctcctggtttcggtggccccggtccttctgggcttccagggttgccaggc
gccaagggagacccaggtcttcccggtccctctggcaatcctggtttccccggtactaaa
ggagaggctggcttccctggtagccctggttctccaggaaacactggccctcctgggcct
ccaggacaagctctgtcgggccctaaaggactcccaggtccccctggaccacccggacga
gcaggtccctcaggtcctccaggtccagccggcccagagggtcctcgtggtccccaagga
agtggcggcgttaaaggcgagaagggtatttccggcgctccaggccagcctggcttcccc
gggcagaagggagagtctggtgtttcaggattcccaggtagctctggtcttcctggtgcc
cccggtataaagggagacatcggtctgcctggcgttcctggattccctggacctaaggga
gagtcaggaatccctggtggcatcggtcttcctggagaccctggagaaataggacttact
ggccctcctggtgaccccggtatacctccggctccgatcgtggtgaagggagagcgagga
ccccccggtcctccgggcggacgtggttctccgggatcacctggttcccctggacgcgac
ggactcccaggtcaacctggtaaccctggggatcctggtacggagggtcctcctggcttc
agcggcccacctggcaggaagggagacactggacccgccgggcagcctggtcaacgtggt
taccctggtccccctggttcagacggtccacagggtcctcctggtcttccaggaacagcc
tctgcagcccacggcttcctcatcacccgacacagccagggccaggaagtgcccttctgt
cccgagggaacaaacatcatctacgacggctactccctgctgtacgtgcagggcaacgag
agggcacacggacaggacctcggcacggccggcagctgtctgcgcaggttcagcaccatg
cccttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcc
tactggctgtccactcccgagcccatgcccatgtccatggcccccatcaccggagagagc
atcaagcctttcattagcaggtgtgcagtgtgtgaagctccagccatggtgattgcagtc
cacagtcagaccattcagatcccctcgtgccctacaaactgggaagctctgtggatagga
tactccttcatgatgcacaccagtgcgggtgcagagggctccggtcaggccctggcctcc
cccggctcttgcctggaggagttccgcagcgctcccttcatcgagtgccacggcaggggg
acgtgcaactactacggcaactcctacagcttctggctggccactgtagaacccagtgag
atgttcaggaagccgcagtcggagacgctcaaggcgggtaacctacggacacgcgtcagc
cgttgcgtggtttgcatgaagaggacgtaa

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