Seriola lalandi dorsalis (Yellowtail amberjack): 111670045
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Entry
111670045 CDS
T06058
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111670045
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111670045
NCBI-ProteinID:
XP_023282359
LinkDB
All DBs
Position
Unknown
AA seq
1947 aa
AA seq
DB search
MDELTGQMDFSGGLSGERVVTETVTTTTRLTSLPPKGTSGSNHRNMSSGAGGLGLEKNVL
TQNSSGTYFSSSSVGVNTSNYSSSSGVYLGGDSSGGGDGGGSFIDGDGYRSGGGGGGGGG
GGLGGGSYFVSSVSKVRSSSSGGARRGQTAGSSGGLSPAFRERKNISSRSGGYDGSSSAN
SSPEFTRKDYGNYCSSTTRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSSSV
SPTRSSTASITLPVPKKASVEAKTVSVATQSVSTSFGSGVKSGGFHTIDASGLYDTSLES
GGIDTGVKSGQYDVTLISRQYDTGMKSGQYETSLKSGQFDTGVKSGQYDVTLKSGQYDTG
LKSGQYDIGLKSGQYDTSLKSGQYDIGLKTGQYDTGVKSGQYDVTLKSGQYDTSVRSGQY
DTSVRSGQYDTMRSGQYDTMRSGQYDTMRSGQYDTMRSGQYDTLDATLPTFAWSTSTLPS
SSTTAVTGNTSSYTYQVSNNMSGGTSLVAPTSPSALSVYGFQNNLAPTSGSVLTTSGANI
NANLGGYGVQKNVSNSGGVVSTGVSTTTRSQTDETYKKDYKFLISDKENVQAKRDTETLI
LAKDSGKQFTTTTSGVLGGGSLSGDSIKKEKLISSYSETAPLKTESGNTYYGSSGVVMKD
KATYAEIHRDSGIFGGGGFCCCSDSCCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKL
KNRVATLEAQSAATAHTSRFSGSSNEINGHVGVGVGGGGGGVGSGVGAGGSMGGSSGNDI
GTAGSFGGASGASGASGASGASGASGASGASGASGASGASGGGTGTSFSGSAGSAGTGYG
SSGGRGGTSHSGSAGSVGTSYGGSSGSAGTGYGTSGGSAGTGYGTNGGSAGTGYGSSGGS
AGTSHSGSSGSAGTTYGGSSGSAGTGFSGGTGFGTGVSGGHIDHAVLQMTIQNMLRSEMQ
SQTFRAFLTSSVQGERGLPGPKGEPGSKGDAGFPGIPGAPGAMGHAGPEGPKGQKGSQGE
HGMEGQPGIRGREGPAGPRGEPGTASFGLKGDRGAPGEPGVPGSVGPAGQMGQKGSAGAP
GLSGPPGQPGPQGFRGESGSPGPKGDRGLAGFQGLKGEAGDKGLRGLQGDTGLPGLPGQA
GEKGSKGSMGLSGHDGAKGSRGDQGSAGPPGLRGPAGPPGDAGLPGAPGLQGPPGIPGNP
GQPGAKGDTGEPGRIINAAGSTSIGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGPK
GDRGYKGEQGEAGISVRTTETISSSGTRTQFSSGGASALPGPPGPPGPPGVPGRPGDSRQ
GPPGPPGPPGQPGYGRPGPKGDRGESSFASSSGMFYTGPPGPPGPAGPKGSTGSPGPRGY
QGEQGQQGVPGTPGRPGSSERVSTYAGGHGIPGPPGPPGPPGRPGPQGIKGDTGAPGISG
SSRGSISVTSGPPGPAGPPGPPGQPGSFASSSEMRLYISDYLSRIRQSGNPGPPGPPGPP
GIPGTHSGSIEDIAARIIAYLRSSGSGLIIGPPGPPGPPGPTIELQSVSDVIAVLRRDDV
RRYLISIAQKQQLPSGGSDGLVGSYTIEQIATYVFNIMNDRGIARGPPGPPGPPGPAGAG
GSGFSTATIDYSALMRNTDFRSWISSAIQHGPPGPRGEPGLPGPAGPQGPPGVSTATVYG
AGGRGYSLEDIQRYLQSSGFRGHPGPPGPPGPQGPPGTFTRSVSISGNFPRESIRAEIQD
YLTSDSVRQFITGPPGPQGPRGQKGERGELVYVQGNIQSQGYAHGDSRYGSERREIDISK
LAETLDYSNVALKVTDYIRNQGLLQGYLVEGPSRTNVRAIQGPPGPPGPPGPPGYSRVIG
SYGNVTADLMEFFRTHGTIPGPPGNPGPKGDRGYPGPRGEKGDLGQQGLPGLPGAYSVQI
PHRVQKRDTGKKVVGRRQLHRRQANGG
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaggacagatggacttctctggaggcttgtcaggagaaagggttgtg
acagaaaccgtaaccacgacgaccagactgacttctctaccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcggtgctggagggctgggcttggagaagaatgtctta
acccagaacagcagtggaacttatttctcttcatcctctgtaggtgtaaacaccagcaac
tacagctcctcctcaggagtttacctaggaggagactcctcagggggaggcgatggaggg
gggagcttcatagacggtgacgggtacagaagtggaggaggaggaggaggaggaggagga
ggaggattgggcggaggcagttatttcgtgagctcggtgtcaaaggtcaggtccagctcg
tcgggtggtgccaggagagggcagactgctggctcatcaggaggcctgtcgccagctttc
cgggagaggaagaacatatccagccgttcagggggttatgacggaagttctagtgctaat
tcctctccagaatttacacgaaaagattatggaaactactgctccagcaccacaagaggg
aggagcgagagcagagagagcgagatcagagccagactacaaagtgcctctcccactgct
tgcagatggacggagctggacgacgtgaagaagctgctgaagggacgttcaagcagcgtc
agccccactcgctcctccaccgcctccatcaccctgcctgtccctaaaaaggccagcgtg
gaagccaagaccgtctctgtggccacacagtcggtttcaacttcatttggctctggtgtg
aaatcaggtggattccacaccattgatgcgtcaggcctgtatgataccagtctggaatct
gggggtattgatactggcgtaaaatcaggccaatatgatgtcactctgatatcaagacag
tatgacactggtatgaaatcaggccagtatgagaccagtctgaaatcaggacagtttgat
actggtgtaaaatctggccagtatgatgtcactctgaaatcaggacagtatgataccggt
ctgaagtcaggacagtatgatatcggtctgaaatcaggacagtatgataccagtctgaag
tcaggacagtatgatatcggtctgaaaacagggcaatacgatactggtgtaaaatcaggc
cagtatgatgtcactctgaaatcaggacagtatgataccagtgtgagatcaggacagtat
gataccagtgtgagatcaggccagtatgacaccatgagatcaggccagtacgacaccatg
agatctggccagtacgacaccatgagatcaggccagtacgacaccatgagatctggccag
tatgacacgctggacgcaacacttccaactttcgcttggtccacctccacgctgccctcc
tcctccaccacggcggtcactggcaacaccagcagctacacgtaccaggtcagcaacaac
atgtcaggaggaacctctctggtcgcccccacctcaccctcggccctgtcagtttatggc
tttcagaataacctggcgcccacctctggtagtgtgctcaccaccagtggagccaacata
aatgctaacttaggaggttatggtgttcagaagaacgtgtccaatagcggtggtgtcgtc
agcactggagtctctacaaccactagatcccaaactgatgaaacatataagaaagactat
aagttcttgatctctgacaaggagaatgtccaagccaagagggacacggagacgctcatc
ttggctaaagacagcgggaagcagttcaccaccaccaccagcggtgttttaggaggaggg
tcactatctggagattcaataaagaaagagaagcttatttcaagctacagtgagacggcc
ccactgaagacagagtcgggcaacacttactatggatcatcgggagttgtaatgaaagac
aaagccacctatgcagagattcacagggacagtggcatcttcggaggtggaggattttgc
tgctgctctgactcttgttgctcctggtggaaatggctgctgggccttctcctcctctcc
cttctcctgctgggactcctgtttggcctcattgcactggctgaggatgtgagaaagctg
aagaatcgagtggccaccctggaggctcagtcggccgccactgctcataccagtcggttc
tcaggttcttccaatgagatcaacggccatgtgggagttggagttggaggcggaggtgga
ggcgtaggctcaggcgttggtgctggcggctccatgggcggcagcagtggcaatgatatc
ggcactgcaggaagctttggtggtgccagtggtgccagtggtgccagtggagccagtggg
gccagtggtgccagtggagccagtggggccagtggggccagtggggctagtggggccagt
ggcggaggcaccggcaccagcttcagtggcagcgctggcagtgctggtactggttacggt
agcagcggcggcaggggtggtaccagtcatagtggaagcgctggcagtgttggtaccagt
tatggtggaagctctggcagtgctggtactggttacggtaccagcggcggcagtgctggt
actggttacggtaccaacggcggcagtgctggtactggatacggtagcagcggcggcagt
gctggtaccagtcatagtggaagctctggcagtgctggtaccacttatggtggaagctct
ggcagtgctggtaccggtttcagcggtggcactggctttgggactggcgtgagtggagga
cacatagaccatgctgttcttcagatgacaatccaaaacatgctcagatctgaaatgcag
tcacagacattcagagcttttctaacatcctcagtgcagggagagagagggctgcctgga
ccaaaaggtgaacccggatctaaaggtgatgctggtttccctggaattccaggtgctcca
ggtgcaatgggacacgcaggccctgagggtcctaaaggacagaaaggaagccaaggtgaa
catgggatggaggggcaaccaggtatcaggggtcgtgagggcccagctggccccagaggt
gagccaggaactgcaagctttggactgaagggtgacagaggtgctcctggagagcctggg
gttcctgggtctgtgggacctgccggccagatgggacaaaaaggctcagcaggagctccc
ggtctttctgggccaccaggtcaaccaggtcctcagggtttccgtggcgagtcagggtca
cctgggcctaaaggtgacagaggacttgctggatttcagggacttaaaggtgaagctgga
gacaaaggtctcagaggtctgcaaggtgatactggtttaccaggtctgcccgggcaagct
ggagagaaaggatccaaagggtcaatgggattgtctggacatgatggtgcaaaaggatca
agaggtgaccaaggatctgctgggccacctggactcaggggacctgctgggcctcccggt
gatgctggacttccaggagcacctgggcttcaaggaccaccagggataccagggaatcca
ggacaacctggcgccaaaggtgacactggtgaacccggaagaattatcaatgcagctggt
tccacatctattggcatcccaggaccacctgggccctctggtcctcccggccctgctgga
cctcctggattgtcaggtcccattggccctgctggtctgcctggccagcctggtcctaaa
ggtgacagaggatataagggagaacagggagaagcaggaatatcagtgagaacgactgaa
actataagttcatccggaacaaggactcagtttagttctggtggagcctcagcactaccc
ggcccacccggcccaccgggtccacctggtgttcctggacgtccaggagattcaagacaa
ggacctccaggaccacctgggcctccaggtcagccaggttatggaagaccaggacctaaa
ggagacagaggagagtcaagctttgcatccagctctggaatgttttacactggaccacca
ggaccacctgggcctgctgggcctaaaggatcaacaggttctcctggaccaaggggctac
caaggtgaacaaggacagcaaggtgtgcccggcaccccaggaagaccaggaagctctgag
agagtgtcaacttatgctggaggacacgggatccctggtccaccaggtccaccagggcca
cccggacgtccaggaccacaaggaatcaaaggggacactggagctcctggtatttctggc
tcttcaagaggctccatctctgtcacttcaggtcctcctggtcccgcaggtcctcctggc
cctccaggccagccaggctcttttgcttcttctagtgagatgcgcctatacatctctgac
tatctaagtagaatcagacagtctggtaaccctggacctccaggtccacctgggcctcca
ggaatccctggaacccactcaggctctatagaggacattgccgctcggatcattgcctac
ctgcgaagttcaggctcaggcctcatcattggtcctccaggaccaccaggtcctcctgga
cctactattgaacttcagtcagtcagtgatgtcattgctgtgcttcggagagacgatgtg
aggagatatttgatctcaattgcacaaaaacaacaactaccatcagggggatcagacgga
cttgtaggcagttacactatagaacagatagcgacatatgtcttcaatatcatgaatgac
agagggattgctagaggtccacctgggccacctggtcctcctgggcctgctggtgcagga
ggttctggcttcagtacagctacaattgactattctgcactgatgagaaatacagacttc
cgctcttggatcagctctgccatacaacatggtcctcctggtcctcgaggtgagccaggg
ttacctggccctgctggccctcaggggcctccgggagtctccactgccactgtgtatgga
gcgggaggtcgtggctacagcttggaggacattcagcgttacctgcagagttctgggttc
agaggtcatcccggccctcctggtcctccaggtccacagggtccaccaggcactttcact
agatcagtttccatcagtggaaacttccctcgggagagcattcgcgctgaaattcaggat
tatctgaccagtgacagtgttcgtcaattcatcaccggacctccagggcctcaggggcca
aggggtcagaaaggagaacgtggagagcttgtttatgtccaaggcaacatacagagccag
ggctacgctcatggtgactcccgctacggctcggagcgcagagagatcgatatcagcaag
ctcgctgagacattggactactccaatgttgccttgaaagttacagactacatcaggaat
caaggcctgctgcagggctacctggttgagggtccttcgaggacgaatgtaagagcgatt
caaggaccccctggtccacctggtcctcccggaccacctggttacagccgtgtcatcggg
tcctatggcaatgtcacagctgacctcatggaattcttcagaacccatggcaccatcccc
ggccctccaggaaaccctggaccgaagggagacagagggtacccaggacccagaggagaa
aagggtgaccttggacaacagggtttaccaggattaccaggggcatatagtgtccagatt
ccacacagagtgcagaagagggatacaggtaaaaaagtggttggtcgtcgtcagctgcat
cgccgtcaggccaacggtggctaa
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integrated database retrieval system
