Seriola lalandi dorsalis (Yellowtail amberjack): 111670205
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Entry
111670205 CDS
T06058
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111670205
04518 Integrin signaling
111670205
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111670205
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111670205
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111670205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
111670205
NCBI-ProteinID:
XP_023282601
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEEDDQEDAFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSTPIGVPGAKGQKGEPGDITDVV
GPRGPGGPMGPPGEQGPRGSRGEKGEKGTPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPTGPQGYPGLDGAKGETGAVGSKGESGAP
GENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPSGAPGFPGSPGAK
GEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPGAKGSSGAPGIAGAPGFP
GPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAGPQGAHGPQGEEGKRGPR
GEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGASGPKGANGDPGRPGES
GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGATGES
GKSGEKGLSGAPGLRGLPGKDGETGPAGPPGPAGPAGERGEQGQPGPSGFQGVPGEGGAA
GATGPRGERGFPGERGAAGPQGLQGPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMP
GERGAAGIPGPKGDRGDIGEKGPEGAPGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPS
GAPGTRGAPGDRGETGPPGPAGFAGPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAP
GPAGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVR
GDGGPPGRQGDAGLRGPAGTSGEKGDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGER
GFPGLPGPSGEPGKQGGPGGAGDRGPPGPVGPPGLTGPGGEPGREGNPGSDGPPGRDGAA
GIKGDRGNTGPAGAPGAPGAPGASGPVGPTGKQGDRGEAGAQGPSGPPGPAGARGMPGPQ
GPRGDKGEAGEGGERGQKGHRGFTGLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPA
GKDGANGLPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKS
PDPLRYMRADQASGNLRQHDAEVDATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPD
WKSGEYWIDPNQGCTIDAIKVFCNMETGESCVYPKPSSIPRKNWWSSKSKDRKHVWFGET
MNGGFHFSYGDDSLAPNTAAIQMTFLRLLSTEASQNLTYHCKNSVAYMDASMGNLKKAVL
LQGSNDVEIRAEGNSRFTYSVMEDGCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGG
AEQEFGVEVGAVCFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgcttttagctgtatacag
gacggacagcgctatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgcagctgacacatctacgccc
attggagtacctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggacctggtggccctatgggcccaccaggagagcaaggaccccgtggatca
agaggagagaagggagagaagggaacccctggtccccgtggcagagatggtgagcctggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggcctcggc
ggaaactttgctgctcagatggctggtggctttgacgagaaggctggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggacccagaggaccacctggcccctccgga
gcacctggcccacaaggtttccaaggcaacccaggagaggctggcgagcccggacaatct
ggccccatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgaa
gctggcaaacctggcaaatcaggcgagcgtggacctactggacctcagggttatccaggt
cttgatggagcaaagggagagactggagctgttggttctaagggtgagtctggcgctccc
ggagagaacggcgctcctggaccaatgggacctcgtggtttgcccggtgagagaggtcgt
cctggacccagtggagctgctggagcccgtggaaatgatggcttgcccggccctgctggt
cccccaggccctgtcggtccttctggagctcctggcttccctggctctcctggtgcaaag
ggagaagctggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagag
tctggcactcctggatcatctggaccttctggcgcttctggcaaccccggtactgatggc
atccctggagctaaaggatcatctggtgctcctggtatcgctggtgctcctggtttccca
ggacctcgtgggcctcccgggcctcagggagctactggacctctcgggcccaaaggaaca
tctggagacccaggtattccaggattcaagggagaggctggaccaaaaggagaacttgga
ccagctggtcctcagggagcacatggcccacagggagaagagggcaagagaggacccagg
ggtgagcccggtgctgctggaccacttggacctcctggagagagaggagcccccggtaac
cgtggtttccctggtcaagatggtctggctggtcccaagggagcccccggtgagcgtgga
cccgctggtgctagtggtcctaagggtgctaacggtgaccccggccgtcctggagagtct
ggtctgcctggtgccaggggcctgactggacgccctggtgacgctggtcctcaaggcaaa
gttggaccttctggagctcctggtgaggatggacgtccaggaccccccggcccacaggga
gcccgtggacagcctggtgtcatgggattccccggacccaagggagcgactggtgagtct
ggcaagtctggtgagaaaggactatctggagctcctggtctgagaggtctgcctggcaaa
gatggagaaaccggccctgctggaccccctggccctgctggccctgctggagagagagga
gagcaaggacagcccggtccctctggcttccagggtgttcctggagagggtggagctgcc
ggtgccactggccccagaggagagcgtggtttccccggagagagaggagctgctggtcct
cagggtctgcagggacccagaggtcttcctggaactcctggaactgacggaccaaaggga
gccattggacctgccggtgccgctggagctcaaggaccccccggcctgcagggtatgcct
ggagagagaggagctgctggcattcccggacctaaaggagacagaggtgacattggagag
aaaggacctgaaggtgctcccggcaaagacggtgccagaggtctcactggtcccatcggt
cctccaggtccctctggccccaacggtgagaagggagaatctggtcctgctggtccttct
ggagctcctggtacccgcggtgcgcctggtgacaggggtgagactggacctcctgggcct
gctggatttgctggaccccctggagctgacggtcaacctggaaccaagggagagcaggga
gaatctggacagaagggagacgctggtgcccctggaccccaaggaccatctggtgcccct
ggacctgcaggtcctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacct
cctggtgccactggtttccctggagctgctggccgtgttggaccccctggtcccaatggt
aatcctggacctgctggtcctgccggccctcctggcaaagatggacccaagggagtgagg
ggagatggtggacctccaggcagacagggtgacgctgggctccgcggtcctgctggcact
tctggagagaagggagatgctggagaggatggtcctcctggccccccaggtccttcaggt
cctcagggtttggccggtcagcgcggtattgtcggtctacctggacagcgtggtgagaga
ggtttccctggtctgcctggaccttctggtgagcccggaaagcagggaggtcctggtggc
gctggagaccgtggaccccctggaccagttggacctcctggactcactggacctggagga
gagcctggcagagagggcaaccctggatctgatggacctcctggtagagatggtgcagct
ggaatcaagggtgatcgtggtaacaccggtcctgctggtgctcctggtgccccaggcgct
cctggtgcctccggtcctgttggtcctaccggcaaacagggagacagaggagaggctggt
gcacaaggaccttctggacctccaggacctgccggagcaagaggaatgcctggaccccaa
ggaccccgtggtgacaaaggtgaggctggagagggcggtgagagaggacagaagggacac
agaggcttcactggtctgcagggtctgcccggacctccgggtcaagctggagaccagggt
gctactggacctgctggaccttctggacaaagaggaccccctggacctgttggccctgct
ggaaaggacggtgcaaacggtctgccaggacccattggaccccctggacctcgtggtcgc
tctggagagaccggtcccgctggtccccctggaaaccctggaccccccggtcctcctggt
ccccccggccctggcatcgatatgtctgccttcgctggcctgggtcagactgagaagtcc
cctgatcctctcaggtacatgagggccgaccaggcttccggaaacctccgtcagcacgat
gctgaggttgacgccaccttgaaatctctcaacaaccagatagagaacatccgcagcccc
gagggatccaagaaaaaccctgctcgcacctgcagggacctgaagctctgccatcctgac
tggaagagcggagagtactggatcgaccccaatcagggctgcactattgatgcaatcaag
gtcttctgcaacatggagacaggagagtcctgcgtctaccccaagccttccagcatccct
cgcaagaactggtggtccagcaagagcaaagaccgcaaacacgtctggttcggagagaca
atgaacggaggattccactttagctatggtgatgacagcctggcgcccaacactgctgcc
attcagatgaccttcctgagactgctgtccaccgaggcctctcagaacctcacctaccac
tgtaagaacagcgtggcctacatggacgcctcaatgggcaacctgaagaaggccgtgctg
ctgcagggctccaacgacgtggagatcagagccgagggcaacagccgcttcacttacagc
gtgatggaggacggctgcacaaaacacacaggacagtggggcaagacagtgatcgaatac
agatcgcagaagacctctcgtctccccattgtggacattgcccccatggatattggtgga
gcagagcaggagttcggagtcgaagttggagcagtctgcttcttgtag
DBGET
integrated database retrieval system
