Seriola lalandi dorsalis (Yellowtail amberjack): 111670247
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Entry
111670247 CDS
T06058
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111670247 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slal03041
]
111670247 (prpf4)
Spliceosome [BR:
slal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111670247 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
111670247
NCBI-ProteinID:
XP_023282662
Ensembl:
ENSSLDG00000008115
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MLFSRVFFFFCLCATVVSTGKQPLTRKQMTCLHPGHGIERLRRFVCLRLLWAPQQQQYKK
KKRECVKMSDEEDAAPAVKKSRVFYGSLEEKERERLSSEMASSAMSGSDAVKAGIEAGNI
NISSGETLEMEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEG
PADRRERLRSVLSVVGPDALKKSRKDEERAKRSQDECQQTWYHEGSVFLRDARLWLAKYS
LPRAMKRLEAARAQRDVAEATRTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKM
LATASWSGLCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQAGVYLDQSDVSLASCAADGSV
KLWNLKSDEPVADIEGHSERVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHS
KGVHDLHFHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATG
SGDNTCKVWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPL
KTLAGHEGKVMGVDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttcccgggtttttttctttttctgtttgtgtgctaccgttgtatcgaccgga
aaacaacctttgacccggaagcagatgacgtgtttacatccgggtcacggaattgagaga
ctccgacgcttcgtttgtcttcggctcctctgggcgccacagcagcagcagtacaagaag
aagaagagggagtgtgtgaaaatgtccgacgaagaggacgcggctccagccgtgaagaag
agtcgtgtgttctatggaagcctcgaggagaaagagagggaacgtctgagctcagagatg
gcaagcagcgcaatgtcaggaagtgatgcggtgaaggcggggatagaggctggtaacatc
aacatctcctcaggagagactctggagatggaggagcgggtcagcgagcggcagcaggaa
gcgctcgctgagttcgagcggcggcggcgagcacgacagatcaccgtctccaccgatgac
gcagaggtgaaggccggtctccgggcacttggagagccaatcacgttgttcggagaggga
ccagctgaccgccgggagaggctgcgaagtgtcttgtctgtggtcggtccagacgctctg
aagaagtccaggaaagatgaagagagagctaagagatcacaggatgagtgccagcagacg
tggtaccacgagggctccgttttcctgcgggacgcccggctctggttggccaaatactct
ctgccacgggcgatgaagcgtctggaggctgcacgtgctcagagggatgttgccgaggca
accaggacgatccggcaacaggagctgcacaagagcctgaggaatctgaacaacttctgc
agtcagatcggtgatgatcgaccaatcagtttctgccacttcagccccgactccaagatg
ctggccaccgcctcctggagtggtctgtgtaagctgtggtctgtccctgactgtaacctg
atccgaacactcagaggacacaacaccaatgtgggtgcagttgttttccgcccacaggct
ggagtctatctcgaccaatcggatgtcagcttggcgtcgtgtgcagctgatgggtctgtg
aagctgtggaacctaaagagcgacgagccagtggcggacatcgagggtcacagtgagcgg
gtgtctcgggtgtcatggcatccatctggaaggttcctgggaacaacctgttacgacaac
tcgtggcgtctgtgggacctggaggttcaagaggaaatcctccatcaggaaggtcacagc
aaaggagtccacgatcttcacttccaccctgacgggtcgctggctgctactggagggctg
gatgcgttcggcagggtgtgggaccttcggactggacgctgtgttgttttcctggaggga
cacctgaaggagatctacagtctgcacttctcccccaacgggtatcacctggcgacagga
agtggtgataacacctgtaaggtttgggagctgagaaacaggaagtgtctgtacacagtg
ccggcccaccagaacctgctctctgctgtccggttccaacctacagacggtcacttcctg
ttgacaggagcgtacgacaacacagcgaaggtctggagtcaccctggctggacgccgctg
aaaacgcttgctggacatgaggggaaggtgatgggtgtggacgtgtcacctgacgggaaa
ctgatcgcaaccagctcctatgaccgaaccttcaaactctggctgtctgagtga
DBGET
integrated database retrieval system
